Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24140 267 / 2e-85 bHLH bHLH097, FMA FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G22490 150 / 9e-42 bHLH bHLH094 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G06120 146 / 1e-41 bHLH MUTE, bHLH045 MUTE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G72210 145 / 6e-40 bHLH bHLH096 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G01460 138 / 2e-37 bHLH bHLH057 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G61950 136 / 9e-37 bHLH bHLH067 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G46810 137 / 1e-36 bHLH bHLH070 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G46690 118 / 8e-30 bHLH bHLH071 beta HLH protein 71 (.1) AT5G65320 110 / 2e-27 bHLH bHLH099 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G53210 108 / 3e-26 bHLH SPCH, bHLH098 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016680 [exp] 439 / 1e-151 AT3G24140 358 / 2e-120 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10029950 [exp] 159 / 1e-44 AT1G72210 226 / 4e-72 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10000332 [exp] 155 / 4e-43 AT1G22490 221 / 4e-70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10010101 [exp] 145 / 1e-41 AT2G46810 199 / 1e-63 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10012603 [exp] 138 / 8e-39 AT2G46810 202 / 4e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10010503 [exp] 140 / 1e-38 AT3G06120 191 / 4e-61 MUTE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007138 [exp] 134 / 2e-37 AT3G24140 124 / 2e-34 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10039328 [exp] 139 / 3e-37 AT5G53210 257 / 3e-83 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10001066 [exp] 139 / 4e-37 AT5G53210 268 / 9e-88 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G314400 [exp] 316 / 2e-104 AT3G24140 399 / 2e-137 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.017G054500 [exp] 297 / 3e-97 AT3G24140 344 / 8e-116 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.013G025900 [exp] 171 / 2e-49 AT1G72210 243 / 2e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G101900 [exp] 170 / 3e-49 AT1G72210 256 / 4e-84 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G202900 [exp] 164 / 3e-48 AT3G06120 250 / 5e-85 MUTE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G039800 [exp] 166 / 3e-47 AT1G72210 231 / 5e-74 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G093200 [exp] 154 / 2e-43 AT5G46690 191 / 8e-59 beta HLH protein 71 (.1) Potri.001G141100 [exp] 154 / 3e-43 AT5G46690 222 / 6e-71 beta HLH protein 71 (.1) Potri.014G106300 [exp] 155 / 5e-43 AT2G46810 247 / 9e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.012G031800 [exp] 153 / 1e-42 AT5G53210 303 / 2e-101 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10007139 pacid=23139748 polypeptide=Lus10007139 locus=Lus10007139.g ID=Lus10007139.BGIv1.0 annot-version=v1.0 ATGTATTTGTACCAATATCATGGTGGTGATGAATTGTTGGTCCTCATGCAGGCATGTTTCACAGAGCAGCTAGATGAGGAGCAACACCACTATCCTCCCT TCTCCAGCTCCCACCATTCTCAATCATCCTATCATCACCATCATCATGAATTGCTGATGAAGCCTCCACCACCGCCACCGCCTCGCCATATGCTTCTCCA AACCACTACTAGTACCAACAACAACAACATGGATCACTTGATTTTCAATACAAACAACCAATCCTCCTCATCCTCATCCTCAATCATATCCCCCAGCTTC GACAAGCTCATGAGCTTTGCTGACGTCATGCAGTTTGAAGATTTCGGCCCTAAACTCACCCTAAACCAGAAGGCGATGATCACCCCCCCACCCACCAACA CTGCTACCGATCCGGTATACTTCCTCAAGTTCCCTGTCCTCAACGACTGGGAGGGTGACCACCACGACCACGACCCACAATTAGGAATGATTACTTTGTC ATCATCACCACCACCACCAGAAGCAGTTCATCCTCCTCCTCCTCCAATGAAGATGCTGAGGTTTGATGCCCACGTGGATGAGACCACAGCAAACAATAAC AACAACAACAACAATAATAACGAATTTGAAGATAATCATCAGTACCAGCATCATAATCATGACGAAAACAAGAATGGAGGCGGAGGTGATGACAACATAG GAGGTAATAAGAACAAGAGAAAACGGACAAGGAGTGTGAAGACGAGCGAGGAGGTTGAGAGCCAGAGAATGACTCATATCGCTGTCGAGAGGAATCGTAG GAAGCAAATGAACGAACACCTCCGAGTCCTTCGTTCCCTCATGCCTGGCTCCTACGTTCAAAGGGGAGACCAAGCGTCGATAATAGGAGGGGCGGTAGAG TTTGTGAGGGAGTTAGAGCAGCTACTCCAGTGCTTGGAGTCTAAGAAGAGGAGGCGCCTCTATGGGGATCAGCCACCACCTCTGACGACTCAGAGGCAGC AACATCCGATTGTTGAGAATAATAATAATGATGATGATCATGAACAGCAGTTACTGATGATGAATTTGGAATCGGAAAGTATGGCTGAGAACAAATCGTG TCTTGCTGACGTGGAGGTTAAGCTGTTAGGGTTTGATGCAATGATTAAGGTTTTGTCGAGGAGGAGACCTGGTCAGCTGATTAAGGCCATTGCTGCTTTG GAGGATTTGCAGCTTACAATCCTGCATACCAACATCACTATCATTGAGCAAACTGTGCTTTATTCCTTTAACGTCAAGGTAATTATAATTTAA
AA sequence Show only first row Show all	>Lus10007139 pacid=23139748 polypeptide=Lus10007139 locus=Lus10007139.g ID=Lus10007139.BGIv1.0 annot-version=v1.0 MYLYQYHGGDELLVLMQACFTEQLDEEQHHYPPFSSSHHSQSSYHHHHHELLMKPPPPPPPRHMLLQTTTSTNNNNMDHLIFNTNNQSSSSSSSIISPSF DKLMSFADVMQFEDFGPKLTLNQKAMITPPPTNTATDPVYFLKFPVLNDWEGDHHDHDPQLGMITLSSSPPPPEAVHPPPPPMKMLRFDAHVDETTANNN NNNNNNNEFEDNHQYQHHNHDENKNGGGGDDNIGGNKNKRKRTRSVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAVE FVRELEQLLQCLESKKRRRLYGDQPPPLTTQRQQHPIVENNNNDDDHEQQLLMMNLESESMAENKSCLADVEVKLLGFDAMIKVLSRRRPGQLIKAIAAL EDLQLTILHTNITIIEQTVLYSFNVKVIII

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24140	bHLH	bHLH097, FMA	FAMA, basic helix-loop-helix (...		Lus10007139 [exp]	0	1
AT3G15570			Phototropic-responsive NPH3 fa...		Lus10030390 [exp]	2.2	0.8974
AT2G37240			Thioredoxin superfamily protei...		Lus10030907 [exp]	3.0	0.9259
					Lus10021792 [exp]	3.5	0.9067
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10022020 [exp]	3.7	0.9185
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009621 [exp]	4.0	0.8992
AT1G27940		ABCB13, PGP13	ATP-binding cassette B13, P-gl...		Lus10017270 [exp]	4.6	0.8792
AT4G00110		GAE3	UDP-D-glucuronate 4-epimerase ...		Lus10031127 [exp]	8.7	0.8536
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10005762 [exp]	10.4	0.8827
AT1G12950		RSH2	root hair specific 2 (.1)		Lus10036853 [exp]	11.0	0.8453
AT3G23530			Cyclopropane-fatty-acyl-phosph...		Lus10023741 [exp]	11.0	0.8746

Compare expression of checked genes

Lus10007139 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.