Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32730 1543 / 0 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit (.1) AT1G04810 1506 / 0 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016681 [exp] 1742 / 0 AT2G32730 1602 / 0.0 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G314300 [exp] 1604 / 0 AT2G32730 1617 / 0.0 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit (.1) Potri.017G054400 [exp] 1600 / 0 AT2G32730 1642 / 0.0 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit (.1) Potri.004G183750 [exp] 248 / 7e-75 AT2G32730 265 / 9e-82 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit (.1) Potri.004G183675 [exp] 0 / 1 AT2G32730 105 / 1e-26 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01851 [flax] [poplar] PC_rep Proteasome/cyclosome repeat
Representative CDS sequence Show only first row Show all	>Lus10007140 pacid=23139741 polypeptide=Lus10007140 locus=Lus10007140.g ID=Lus10007140.BGIv1.0 annot-version=v1.0 ATGGCTGCCACGATGGTTAGCTCCGCTGGCGGTTTACTCGCGATGCTCAATGAGCCTCATCCCCTTCTGAAGCAGCACGCTCTTGTCTCCCTAAACATCT TCGTCGATCTGTTCTGGCCCGAGATCTCAACGAGCGTGGCTGTAATAGAGAGTTTGTACGAGAATGAGGAATTTGATCAGAGACTGAGACAACTTGCAGC ACTTCTTGTTTCCAAGGTTTTCTACTACCTCGGTGAATTCATTGATTCGCTGTCCTATGCTCTTGGAGCTGGTTCCTTGTTTGATGTTTCGGAGGATTCT GATTTTGTTCATACTCTGCTTGCCAAAGCCATTGATGAATATGCCAGTCTAAAGACCAAGGCAATTGAATCTAGTGTTGATGCTGAAAGCATAGATCCTA GGTTGGAGGCGATTGTTGAGAGAATGCTTGATAAGTGTATTACTGACGGGAAATACCAACAAGCAATGGGAATTGCTATTGAGTGCCGGAGACTGGATAA GCTTGAAGAAGCCATTATTAGGAGTGATAATGTACATGGGACTCTATCATATTGCATCAAAGTATCCCATTCTTTCATCAACCGCAGGGAATATCGTTGT GAGGTGCTTCGTCTTCTGGTTAATGTATACCAAAAGTTGCCTTCACCAGATTATTTGAGTATTTGTCAGTGTTTGATGTTCTTGGATGAACCTGAAGGTG TAGCAAGCATTCTGGAAAAGCTTCTACGCTCCGAAAACAAAGATGATGCTTTATTGGCTTTACAGATTGCATTTGATCTTGTGGAGAATGAGCACCAGGC TTTTCTCTTAAATGTTAGAGATCGCCTTCCAGCTCCCAAGTCTCAGCCTTCAGAGTCCACAAATCCAAGGCCTGACGAGCCAGTTTCCACTCAACCTGAT CATCCAACAGCTTCAGAAGATGCTACAATGGCAGAAGGAACCTCTGCATCTGCTAATAGTGCACCAGAAATTGATCAAAGTGAGGAAACATATGCTGAGA GGCTGACAAAAATTAAAGGGATTCTCTCTGGGGAGACATCGATACAGTTGACTCTGCAATTCTTGTATAGTCACAATAAATCGGATCTACTAATTCTGAA GGCGATAAAACAATCTGTTGAGATGAGGAATAGTGTCTGCCACAGTGCAACTATATATGCCAATGCAATCATGCATGCTGGGAAAACGGTGGATACATTT CTTCGTGAGAACCTGGATTGGCTGAGCAGGGCTACAAATTGGGCAAAGTTCAGTGCAACAGCTGGTCTTGGAGTTATCCACAGAGGGCATCTGCAGCAGG GGAGGTCTTTGATGGCACCCTATTTGCCCCAAGGAGGGGCTGGTGGTGGTGGTAGTCCTTACTCTGAAGGTGGTGCTCTGTATGCTCTAGGTCTCATTCA TGCCAATCATGGCGAAGGGATCAAACAATTTCTTCGTGATAGTCTACGTAGCACTAATGTTGAGGTAATCCAACATGGTGCGTGCCTAGGTCTGGGTTTG GCAGCTTTAGGCACCGCTGATGAAGATATCTATGATGATATCAAGAGTGTGTTATATACTGATAGTGCTGTTGCTGGTGAAGCTGCTGGTATTGGCATGG GCTTGCTCATGGTTGGTACTGCAAGTGAGAAGGCAAGTGAGATGCTTGTTTATGCTCATGAGACGCAGCATGAAAAAATTATAAGAGGATTGGCCATGGG CATAGCCCTAACTGTTTATGGTAGAGAAGAGGAAGCCGACACTCTAATTGAGCAGATGACTAGGGATCAGGACCCCATACTACGTTATGGTGGTATGTAT GCTTTAGCATTGGCCTATGGCGGAACAGCAAACAACAAGGCAATTCGCCAGCTACTGCATTTTGCTGTCTCCGATGTGAGTGATGATGTCAGGAGGACTG CTGTGCTTGCTCTAGGATTTGTTATGTACTCAGAGCCTGAACAGACTCCTCGAATTGTTTCCTTACTGTCAGAGTCCTACAACCCACACGTGCGTTATGG GGCAGCCCTTGCTGTAGGCATTTCTTGTGCTGGCACAGGCTTGAGTGAGGCTATATCTTTGCTAGAACCGTTGACATCAGATGTTGTGGACTTTGTTCGT CAAGGTGCCCTAATTGCGATGGCCATGGTCATGATTCAGATGAATGAAGCTGGTGATTCTCGAGTTGGGACATTCAGGCGACAATTGGAGAAAATAATCC TTGACAAGCATGAAGATACCATGAGTAAAATGGGAGCAATCCTTGCTTCTGGGATATTGGATGCTGGTGGCAGGAATGTAACAATAAGACTGCTCTCAAA GACTAAACACGATAAAATTACTGCCGTGGTTGGTCTGGCAGTTTTCAGTCAGTTTTGGTATTGGTATCCTCTCACTTATTTCATTACCTTGGCATTCTCT CCCACGGCGTTTATTGGGCTCAACTATGACTTGAAAGTTCCAAAGTTTGAGTTTCTATCAAATGCAAAACCATCACTGTTCGAATATCCTAAGCCAACCA CGGTGCCCACCACTACCTCTCTCGTGAGACTGCCTACTGCTGTTTTGTCGACATCAGCTAAGGCTAAAGCTAGAGCAAAGAAAGAAGCAGAGCAGAAAGC TATTACTGAAAAGGCAACTAGTGTGGAACCCTCATCAAATGCAATAAATGCTGGGAAAGGGGAATCCAGTGAGAAGGATGGCGACTCCATGCAGGTTGAT AATCCAGCGGATAAGAAAGTAGAACCCGAGCCTTGTTTTGAAGTCTTGACCAATCCAGCAAGGGTGGTTCCGTCCCAGGAAAAGTACATAAAGTTGATGG AAGATAGCAGATACGTGCCGGTGAAAGTAGCACCTTCAGGATTTGTCCTTCTCCGGGACATGAAACCAACAGAACCCGAGGTGCTGTCCTTGACGGATGC CCCTTCGTCTACTGCTGCGGCAGCTGCTGCTGCTGGACAACAAGGCTCTGCTTCAGCAATGGCTGTTGATGACGAACCCCAGCCTCCTCAGCCTTTTGAA TACACCTCATAA
AA sequence Show only first row Show all	>Lus10007140 pacid=23139741 polypeptide=Lus10007140 locus=Lus10007140.g ID=Lus10007140.BGIv1.0 annot-version=v1.0 MAATMVSSAGGLLAMLNEPHPLLKQHALVSLNIFVDLFWPEISTSVAVIESLYENEEFDQRLRQLAALLVSKVFYYLGEFIDSLSYALGAGSLFDVSEDS DFVHTLLAKAIDEYASLKTKAIESSVDAESIDPRLEAIVERMLDKCITDGKYQQAMGIAIECRRLDKLEEAIIRSDNVHGTLSYCIKVSHSFINRREYRC EVLRLLVNVYQKLPSPDYLSICQCLMFLDEPEGVASILEKLLRSENKDDALLALQIAFDLVENEHQAFLLNVRDRLPAPKSQPSESTNPRPDEPVSTQPD HPTASEDATMAEGTSASANSAPEIDQSEETYAERLTKIKGILSGETSIQLTLQFLYSHNKSDLLILKAIKQSVEMRNSVCHSATIYANAIMHAGKTVDTF LRENLDWLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGL AALGTADEDIYDDIKSVLYTDSAVAGEAAGIGMGLLMVGTASEKASEMLVYAHETQHEKIIRGLAMGIALTVYGREEEADTLIEQMTRDQDPILRYGGMY ALALAYGGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVMYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVR QGALIAMAMVMIQMNEAGDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVVGLAVFSQFWYWYPLTYFITLAFS PTAFIGLNYDLKVPKFEFLSNAKPSLFEYPKPTTVPTTTSLVRLPTAVLSTSAKAKARAKKEAEQKAITEKATSVEPSSNAINAGKGESSEKDGDSMQVD NPADKKVEPEPCFEVLTNPARVVPSQEKYIKLMEDSRYVPVKVAPSGFVLLRDMKPTEPEVLSLTDAPSSTAAAAAAAGQQGSASAMAVDDEPQPPQPFE YTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32730			26S proteasome regulatory comp...		Lus10007140 [exp]	0	1
AT2G32730			26S proteasome regulatory comp...		Lus10016681 [exp]	1.0	0.9887
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Lus10022666 [exp]	1.7	0.9566
AT2G20580		RPN1A, AtRPN1a	26S proteasome regulatory subu...		Lus10002169 [exp]	2.0	0.9650
AT5G28740			Tetratricopeptide repeat (TPR)...		Lus10022347 [exp]	2.8	0.9564
AT3G49500		SDE1, SGS2, RDR...	SUPPRESSOR OF GENE SILENCING 2...		Lus10002909 [exp]	3.3	0.9336
AT5G37510		CI76, EMB1467	embryo defective 1467, NADH-ub...		Lus10000183 [exp]	3.5	0.9311
AT5G02950			Tudor/PWWP/MBT superfamily pro...		Lus10040367 [exp]	6.3	0.9340
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10025168 [exp]	7.1	0.9483
AT1G09770	MYB	ATCDC5, AtMYBCD...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10043451 [exp]	7.5	0.9394
AT1G31430			Pentatricopeptide repeat (PPR-...		Lus10004052 [exp]	8.4	0.9302

Compare expression of checked genes

Lus10007140 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.