Plant FIBer expression Database

Lus10007141 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10007141 pacid=23139738 polypeptide=Lus10007141 locus=Lus10007141.g ID=Lus10007141.BGIv1.0 annot-version=v1.0
ATGGCTCCTCGAAAAACAGCTCTCTTGATCGTCCTGTTTATTATCAATGTCGCCTTACTGTCTTTTGTGACAGCCGGTCAAAAACAACAGCAGCAGGAGC
AGCAGGAAGTTGCGGCAGGAGAAGAGGGGGAAGACAAGCATTTTGCGGTGGTGCCACGTCCGCTGCTCAGAGGTGGAGGGAAAGGAGTAGGCCACGGAAT
TTCCGACAAAGGGTTCGGCCACAGGAGGTTCGGTGGCGGCGGCCTAGGTGGCGGCTTTGGAGGAGGAGGTGGAGCAGGATTCGGTGGAGGTGCAGGAGGT
GGACTTGGCGGTGGTGGTGGCTTGGGAGGAGGAGCTGGTGGTGGTTTGGGTGGTGGCATTGGCCATGGTGGTGGTTTAGGTGGCGGTATTGGTCATGGTG
GTGGTCTAGGTGGCGGAATCGGACATGGCGGGGGACTCGGAGGTGGGATTGGACATGGAGGTGGCCTAGGTGGTGGGATCGGACATGGCGGAGGACTTGG
AGGTGGGATTGGTAAAGGTGGTGGACTTGGAGGCGGTGGTGGACTTGGTGGGGGTGCCGGTGGTGGTGGCGGACTTGGAGGAGGAGGTGGTCTCGGTGGC
GGAGGTGGGTTGGGTGGTGGTGGTGGGTATGGAGGAGGTGGTGGGTTTGGTGGTGGTGGTGGGTTCGGTGGAGGAGGAGGGTTTGGTAGTGGTGGTGGCA
TTGGCGGGGGCGACGGTGAGGACGGCGGTGGGGAGCTTGGAGGAGGTGAAGATGAAGGCGGAGATGCTGGTTACGGCGGGGAGGGTGAAAACGTCGGAGG
GATTGATGAACCTTGA
AA sequence
>Lus10007141 pacid=23139738 polypeptide=Lus10007141 locus=Lus10007141.g ID=Lus10007141.BGIv1.0 annot-version=v1.0
MAPRKTALLIVLFIINVALLSFVTAGQKQQQQEQQEVAAGEEGEDKHFAVVPRPLLRGGGKGVGHGISDKGFGHRRFGGGGLGGGFGGGGGAGFGGGAGG
GLGGGGGLGGGAGGGLGGGIGHGGGLGGGIGHGGGLGGGIGHGGGLGGGIGHGGGLGGGIGHGGGLGGGIGKGGGLGGGGGLGGGAGGGGGLGGGGGLGG
GGGLGGGGGYGGGGGFGGGGGFGGGGGFGSGGGIGGGDGEDGGGELGGGEDEGGDAGYGGEGENVGGIDEP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10007141
[exp]
0 1
AT5G65630 GTE7 global transcription factor gr... Lus10039630
[exp]
1.4 0.9056
AT3G06868 unknown protein Lus10001474
[exp]
8.7 0.8747
AT2G35160 SGD9, SUVH5 SET DOMAIN-CONTAINING PROTEIN ... Lus10032528
[exp]
9.3 0.9116
AT2G26520 unknown protein Lus10032762
[exp]
9.6 0.8660
AT1G63470 AT-hook AT hook motif DNA-binding fami... Lus10001997
[exp]
11.5 0.8696
AT2G47940 EMB3117, DEGP2 EMBRYO DEFECTIVE 3117, DEGP pr... Lus10005931
[exp]
12.0 0.9044
AT5G14070 ROXY2 Thioredoxin superfamily protei... Lus10023295
[exp]
12.7 0.9002
AT2G26520 unknown protein Lus10021765
[exp]
15.6 0.9017
AT2G42840 PDF1 protodermal factor 1 (.1) Lus10010941
[exp]
22.4 0.8962
AT5G13150 ATEXO70C1 exocyst subunit exo70 family p... Lus10011334
[exp]
23.2 0.8912

Lus10007141 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.