Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description ATCG01280 84 / 3e-19 ATCG01280.1, YCF2.2 Chloroplast Ycf2;ATPase, AAA type, core (.1) ATCG00860 84 / 3e-19 ATCG00860.1, YCF2.1 Chloroplast Ycf2;ATPase, AAA type, core (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002548 [exp] 226 / 3e-69 ATCG01280 829 / 0.0 Chloroplast Ycf2;ATPase, AAA type, core (.1) Lus10026434 [exp] 63 / 4e-13 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G143400 [exp] 87 / 1e-20 ATCG01280 3894 / 0.0 Chloroplast Ycf2;ATPase, AAA type, core (.1) Potri.019G028400 [exp] 86 / 6e-20 ATCG01280 928 / 0.0 Chloroplast Ycf2;ATPase, AAA type, core (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007142 pacid=23175295 polypeptide=Lus10007142 locus=Lus10007142.g ID=Lus10007142.BGIv1.0 annot-version=v1.0 ATGATAAAAAATGGATCTTTTTCTATCCTTGAAAAGAGATTTTTCCACAAATTGGTGTTTGAACAACAAGCGGCAGAAGAAGAAAGAGCCCTCGACCCGC TACAGATAGTAGCAGAGGATTTATTCACTGACATAGTTTGGTCTCCTAGAATATGGCACTCTTGGGTAATTCTATTTTATTGTATCAAAAGGCTCAATGA ATTAGGATTTCCCTATGGGTCCAAGTTATATCCGAGCAAGGGGAACATTTATGATGAGATTTATGATGAAGAGGGTGATCTTCGAGAGAAGGTTGAAGAG GATAATCTTGATGACATTTATGAGAAATATAGGAAGGGTGATCTTCAAGAGAATGATGAAGACGATGAGCTTCAAGAGAATGATGAAGAGTTCTTGCAGA GTGCAACCATGCAGTGCCAGATGCGATATGGATCTGCCAACGAACGGGGCTTTTTTTGA
AA sequence Show only first row Show all	>Lus10007142 pacid=23175295 polypeptide=Lus10007142 locus=Lus10007142.g ID=Lus10007142.BGIv1.0 annot-version=v1.0 MIKNGSFSILEKRFFHKLVFEQQAAEEERALDPLQIVAEDLFTDIVWSPRIWHSWVILFYCIKRLNELGFPYGSKLYPSKGNIYDEIYDEEGDLREKVEE DNLDDIYEKYRKGDLQENDEDDELQENDEEFLQSATMQCQMRYGSANERGFF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
ATCG01280		ATCG01280.1, YC...	Chloroplast Ycf2;ATPase, AAA t...		Lus10007142 [exp]	0	1
					Lus10033844 [exp]	1.0	0.8649
AT1G27750			nucleic acid binding (.1)		Lus10007756 [exp]	3.5	0.8039
AT3G08040		ATFRD3, MAN1, F...	MANGANESE ACCUMULATOR 1, FERRI...		Lus10039609 [exp]	4.9	0.8354
ATCG00680		ATCG00680.1, PS...	photosystem II reaction center...		Lus10006593 [exp]	6.2	0.8479
					Lus10024939 [exp]	6.7	0.8146
AT4G02350		SEC15B	exocyst complex component sec1...		Lus10009857 [exp]	6.8	0.8545
					Lus10002802 [exp]	7.1	0.7188
ATCG00680		ATCG00680.1, PS...	photosystem II reaction center...		Lus10001686 [exp]	7.2	0.8461
AT3G51480		ATGLR3.6	glutamate receptor 3.6 (.1)		Lus10035980 [exp]	7.7	0.7865
AT1G60990			Glycine cleavage T-protein fam...		Lus10020818 [exp]	7.7	0.8087

Compare expression of checked genes

Lus10007142 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.