Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20480 44 / 0.0001 AMP-dependent synthetase and ligase family protein (.1) AT1G20510 42 / 0.0003 OPCL1 OPC-8:0 CoA ligase1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002535 [exp] 467 / 7e-163 AT1G20510 79 / 3e-15 OPC-8:0 CoA ligase1 (.1.2) Lus10027377 [exp] 88 / 3e-19 AT4G05160 95 / 2e-19 AMP-dependent synthetase and ligase family protein (.1) Lus10002549 [exp] 83 / 1e-17 AT4G05160 74 / 5e-13 AMP-dependent synthetase and ligase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G227800 [exp] 274 / 7e-88 AT3G21230 47 / 3e-05 4-coumarate:CoA ligase 5 (.1) Potri.003G210600 [exp] 81 / 1e-16 AT1G20480 91 / 4e-18 AMP-dependent synthetase and ligase family protein (.1) Potri.003G210701 [exp] 80 / 1e-16 AT1G20480 91 / 3e-18 AMP-dependent synthetase and ligase family protein (.1) Potri.T085701 [exp] 79 / 2e-16 AT1G20480 91 / 3e-18 AMP-dependent synthetase and ligase family protein (.1) Potri.012G094800 [exp] 48 / 4e-06 AT5G63380 657 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.015G092300 [exp] 42 / 0.0003 AT5G63380 594 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10007144 pacid=23175292 polypeptide=Lus10007144 locus=Lus10007144.g ID=Lus10007144.BGIv1.0 annot-version=v1.0 ATGATCTCCCGTTCCAAAGCCACTTGCACTCTCGTTCCTTCCTTCACTCTACCTCTCGTCCTGAAGCGGGGCGGAGTTGGGGTTTTGAAAAGTGACGATC CGATCAATTTGAGTAGCATGAGAAACTTAATCCTAATCAACGAGCCAATTTACAAGTTGGACGTTGACGAGTTTGTGGAACTGTTCGAGACATTAGGGTT GAATTGCTATTCAATTTCCCCGTCGTATGGTCTGGCGGAGAACTACACATTTGTATCGACGGCGTGGAGAGATCATCATGAGAAGGAAACTAATTATAAT ACGAAATTCGAATTTCCGTCTTACAAGAAGTTGTTGCCTAGCGCGCTGCTTTCGTCGGAGCACGAAGACGGAGATGAGGATATGGAAATCGTTATTGTCA ACGAAGAGACACATGATGTAGTAGGAGATGGGATGGAAGGGGAGATTTGGGTGTCCTCTCTGAGCAATTGCTCCGGTTACTTGGAACACCCTTCCTTGAG TCGAGAAATCTGCCAAGCGAGGCTGAAGAACAAGATCAGCAAGTTGTGTTTTCTCCGTACAGGGGACAGGGGAGTTGTTGTAGTCGCTGGAGGAAGAGAT CGGTATCTCTATGTTACAGGTAGGTACTCTGACATTATAAAGCTAGCCGATGGGAGGGAAATCCACCCACATTACTTGGAGACGGCAACGCAGAGGAGCT GGCCTGAGTTTATCAAGGGAGGATGTTTGGTCGCGTTTAAGGTAGAAGATGATGTCGTTTTAGTAGCTGAGATGCAACGAATTGGCAGAAAGGTTGGTGA GGAATTTTTGATGAAAGAAATCTGCGAGATAATACAGAAGAGAGTTTTAGAATAG
AA sequence Show only first row Show all	>Lus10007144 pacid=23175292 polypeptide=Lus10007144 locus=Lus10007144.g ID=Lus10007144.BGIv1.0 annot-version=v1.0 MISRSKATCTLVPSFTLPLVLKRGGVGVLKSDDPINLSSMRNLILINEPIYKLDVDEFVELFETLGLNCYSISPSYGLAENYTFVSTAWRDHHEKETNYN TKFEFPSYKKLLPSALLSSEHEDGDEDMEIVIVNEETHDVVGDGMEGEIWVSSLSNCSGYLEHPSLSREICQARLKNKISKLCFLRTGDRGVVVVAGGRD RYLYVTGRYSDIIKLADGREIHPHYLETATQRSWPEFIKGGCLVAFKVEDDVVLVAEMQRIGRKVGEEFLMKEICEIIQKRVLE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10007144 [exp]	0	1
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10015242 [exp]	2.4	0.8952
AT2G21140		ATPRP2	proline-rich protein 2 (.1)		Lus10026281 [exp]	6.5	0.8856
AT5G13150		ATEXO70C1	exocyst subunit exo70 family p...		Lus10003142 [exp]	6.8	0.8911
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10035903 [exp]	7.3	0.8789
AT2G23945			Eukaryotic aspartyl protease f...		Lus10023451 [exp]	8.5	0.8706
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10030646 [exp]	10.0	0.8636
AT3G55150		ATEXO70H1	exocyst subunit exo70 family p...		Lus10023455 [exp]	10.4	0.8674
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10032806 [exp]	11.8	0.8853
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10005413 [exp]	13.6	0.8821
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10002192 [exp]	13.6	0.8021

Compare expression of checked genes

Lus10007144 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.