Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002076 [exp] 44 / 0.0007 AT1G64570 612 / 0.0 DUO POLLEN 3, Homeodomain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007146 pacid=23175297 polypeptide=Lus10007146 locus=Lus10007146.g ID=Lus10007146.BGIv1.0 annot-version=v1.0 ATGCGCGCCTTGGCACACCTGGGGTGCGATTTTGGCACACCCGATGCGAGAAAATGCGAGAAAATGCGCACTGGGGGCACATCCGTGCGCAAAAATGCGA GAAAATGCGCACCAGGAGCACACATATGCGCGAAAATGCGCGCCAGGGTGCACACCCATGCGCAAAAACGCGAGAAAATGCGAGAAAATGCGCGCCAGGG TGCGATTTTGGCACACCCTTGCGCAAAAATGCGAGAAAATGCGCACCACAGTGCGATTTTGGCACACCCTTGCGCAAAAATGCGAGAAAATGCGCACCAC AGTGCGATTTTGGCACACCCTTGCGCAAAAATGCGAGAAAATGCGCACCACAGTGCGATTTTGGCACACCCTTGCGCAAAAATGCGAGAAAATGCGCACC ACAGTGCGATTTTGGCACACCCTTGCGCAAAAATGCGAGAAAATGCGCACCACAGTGCGATTTTGGCACACCCTTGCGCAAAAATGCGAGAAAATGCGCA CCACAGTGCGATTTTGGCACACCCTTGCGCAAAAATGCGAGAAAATGCGCACCACAGTGCGATTTTGGCACACCCTTGCGCAAAAATGCGAGAAAATGCG CACCACAGTGCGATTTTGGCACACCCTTGCGCAAAAATGCGAGAAAATGCGCACCACAGTGCGATTTTGGCACACCCTTGCGCAAAAATGCGAGAAAATG CGCACCACAGTGCGATTTTGGCACACCCTTGCGCAAAAATGCGAGAAAATGCGCACCACAGTGCGATTTTGGCACACCCTTGCGCAAAAATGCGAGAAAA TGCGCACCAGGAGCACACATATGCGCGAAAATGCGCGCCAGGGTGCACGCCCATGCGCAAAAATGCGAGAAAATGCGCACCACAGTGCGATTTTGGCACA CCCTTGCGCAAAAATGCGAGAAAATGCGCACCACAGTGCGATTTTGGCACACCCTTGCGCAAAAATGCGAGAAAATGCGCACCACAGTGCGATTTTGGCA CACCCTTGCGCAAAAATGCGAGAAAATGCGCACCACAGTGCGATTTTGGCACACCCTTGCGCAAAAATGCGAGAAAATGCGCACCACAGTGCGATTTTGG CACACCCTTGCGCAAAAATGCGAGAAAATGCGCACCACAGTGCGATTTTGGCACACCCTTGCGCAAAAATGCGAGAAAATGCGCACCACAGTGCGATTTT GGCACACCCTTGCGCAAAAATGCGAGAAAATGCGCACCACAGTGCGATTTTGGCACACCCTTGCGCAAAAATGCGAGAAAATGCGCACCACAGTGCGATT TTGGCACACCCTTGCGCAAAAATGCGAGAAAATGCGCACCACAGTGCGATTTTGGCACACCCTTGCGCAAAAATGCGAGAAAATGCGCACCACAGTGCGA TTTTGGCACACCCTTGCGCAAAAATGCGAGAAAATGCGCACCACAGTGCGATTTTGGCACACCCTTGCGCAAAAATGCGAGAAAATGCGCACCAGGAGCA CACATATGCGCGAAAATGCGCGCCAGGGTGCACGCCCATGCGCAAAAATGCGAGAAAATGCGCACCACAGTGCGATTTTGGCACACCCTTGCGCAAAAAT GCGAGAAAATGCGCACCACAGTGCGATTTTGGCACACCCTTGCGCAAAAATGCGAGAAAATGCGCACCACAGTGCGATTTTGGCACACCCTTGCGCAAAA ATGCGAGAAAATGCGCACCACAGTGCGATTTTGGCACACCCTTGCGCAAAAATGCGAGAAAATGCGCACCACAGTGCGATTTTGGCACACCCTTGCGCAA AAATGCGAGAAAATGCGCACCACAGTGCGATTTTGGCACACCCTTGCGCAAAAATGCGAGAAAATGCGCACCACAGTGCGATTTTGGCACACCCTTGCGC AAAAATGCGAGAAAATGCGCACCACAGTGCGATTTTGGCACACCCTTGCGCAAAAATGCGAGAAAATGCGCACCACAGTGCGATTTTGGCACACCCTTGC GCAAAAATGCGAGAAAATGCGCACCACAGTGCGATTTTGGCACACCCTTGCGCAAAAATGCGAGAAAATGCGCACCACAGTGCGATTTTGGCACACCCTT GCGCAAAAATGCGAGAAAATGCGCACCACAGTGCGATTTTGGCACACCCTTGCGCAAAAATGCGAGAAAATGCGCACCAGGAGCACACATATGCGCGAAA ATGCGCGCCAGGGTGCACGCCCATGCGCAAAAATGCGAGAAAATGCGCACCACAGTGCGATTTTGGCACACCCTTGCGCAAAAATGCGAGAAAATGCGCA CCACAGTGCGATTTTGGCACACCCTTGCGCAAAAATGCGAGAAAATGCGCACCACAGTGCGATTTTGGCACACCCTTGCGCAAAAATGCGAGAAAATGCG CACCACAGTGCGATTTTGGCACACCCTTGCGCAAAAATGCGAGAAAATGCGCACCACAGTGCGATTTTGGCACACCCTTGCGCAAAAATGCGAGAAAATG CGCACCACAGTGCGATTTTGGCACACCCTTGCGCAAAAATGCGAGAAAATGCGCACCACAGTGCGATTTTGGCACACCCTTGCGCAAAAATGCGAGAAAA TGCGCACCACAGTGCGATTTTGGCACACCCTTGCGCAAAAATGCGAGAAAATGCGCACCACAGTGCGATTTTGGCACACCCTTGCGCAAAAATGCGAGAA AATGCGCACCACAGTGCGATTTTGGCACACCCTTGCGCAAAAATGCGAGAAAATGCGCACCACAGTGCGATTTTGGCACACCCTTGCGCAAAAATGCGAG AAAATGCGCACCACAGTGCGATTTTGGCACACCCTTGCGCAAAAATGCGAGAAAATGCGCACCAGGAGCACACATATGCGCGAAAATGCGCGCCAGGGTG CACGCCCATGCGCAAAAATGCGAGAAAATGCGCACCACAGTGCGATTTTGGCACACCCTTGCGCAAAAATGCGAGAAAATGCGCACCACAGTGCGATTTT GGCACACCCTTGCGCAAAATTTCTTTAGAATACCCAAGTTGA
AA sequence Show only first row Show all	>Lus10007146 pacid=23175297 polypeptide=Lus10007146 locus=Lus10007146.g ID=Lus10007146.BGIv1.0 annot-version=v1.0 MRALAHLGCDFGTPDARKCEKMRTGGTSVRKNARKCAPGAHICAKMRARVHTHAQKREKMRENARQGAILAHPCAKMRENAHHSAILAHPCAKMRENAHH SAILAHPCAKMRENAHHSAILAHPCAKMRENAHHSAILAHPCAKMRENAHHSAILAHPCAKMRENAHHSAILAHPCAKMRENAHHSAILAHPCAKMRENA HHSAILAHPCAKMRENAHHSAILAHPCAKMRENAHHSAILAHPCAKMRENAHHSAILAHPCAKMRENAHQEHTYARKCAPGCTPMRKNARKCAPQCDFGT PLRKNARKCAPQCDFGTPLRKNARKCAPQCDFGTPLRKNARKCAPQCDFGTPLRKNARKCAPQCDFGTPLRKNARKCAPQCDFGTPLRKNARKCAPQCDF GTPLRKNARKCAPQCDFGTPLRKNARKCAPQCDFGTPLRKNARKCAPQCDFGTPLRKNARKCAPQCDFGTPLRKNARKCAPQCDFGTPLRKNARKCAPGA HICAKMRARVHAHAQKCEKMRTTVRFWHTLAQKCEKMRTTVRFWHTLAQKCEKMRTTVRFWHTLAQKCEKMRTTVRFWHTLAQKCEKMRTTVRFWHTLAQ KCEKMRTTVRFWHTLAQKCEKMRTTVRFWHTLAQKCEKMRTTVRFWHTLAQKCEKMRTTVRFWHTLAQKCEKMRTTVRFWHTLAQKCEKMRTTVRFWHTL AQKCEKMRTTVRFWHTLAQKCEKMRTRSTHMRENARQGARPCAKMRENAHHSAILAHPCAKMRENAHHSAILAHPCAKMRENAHHSAILAHPCAKMRENA HHSAILAHPCAKMRENAHHSAILAHPCAKMRENAHHSAILAHPCAKMRENAHHSAILAHPCAKMRENAHHSAILAHPCAKMRENAHHSAILAHPCAKMRE NAHHSAILAHPCAKMRENAHHSAILAHPCAKMRENAHHSAILAHPCAKMRENAHQEHTYARKCAPGCTPMRKNARKCAPQCDFGTPLRKNARKCAPQCDF GTPLRKISLEYPS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10007146 [exp]	0	1
					Lus10002716 [exp]	1.4	0.9237
					Lus10026434 [exp]	3.7	0.9070
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10036704 [exp]	6.3	0.8538
ATCG00670		PCLPP, ATCG0067...	CASEINOLYTIC PROTEASE P 1, pla...		Lus10006595 [exp]	6.7	0.8825
AT3G19700		IKU2	HAIKU2, Leucine-rich repeat pr...		Lus10012461 [exp]	6.8	0.8198
AT5G60370			unknown protein		Lus10023343 [exp]	10.4	0.8459
AT3G14470			NB-ARC domain-containing disea...		Lus10022351 [exp]	12.0	0.8320
AT4G17140			pleckstrin homology (PH) domai...		Lus10006816 [exp]	15.3	0.8044
AT5G62360			Plant invertase/pectin methyle...		Lus10024596 [exp]	16.5	0.8389
AT1G67290		GLOX1	glyoxal oxidase 1, glyoxal oxi...		Lus10012980 [exp]	20.5	0.8295

Compare expression of checked genes

Lus10007146 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.