Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75240 118 / 1e-30 ZF_HD ATHB33, ZHD5 zinc-finger homeodomain 5, homeobox protein 33 (.1) AT1G14440 105 / 4e-26 ZF_HD ATHB31, ZHD4 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) AT2G02540 104 / 1e-25 ZF_HD ATHB21, ZFHD4, ZHD3 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) AT4G24660 102 / 1e-25 ZF_HD ATHB22, MEE68, ZHD2 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) AT2G18350 99 / 5e-24 ZF_HD ATHB24, ZHD6 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1) AT3G50890 94 / 2e-22 ZF_HD ATHB28, ZHD7 ZINC FINGER HOMEODOMAIN 7, homeobox protein 28 (.1) AT5G65410 92 / 2e-21 ZF_HD ATHB25, ZFHD2, ZHD1 ZINC FINGER HOMEODOMAIN 1, ZINC FINGER HOMEODOMAIN 2, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 25, homeobox protein 25 (.1) AT1G74660 87 / 3e-21 ZF_HD MIF1 mini zinc finger 1 (.1) AT3G28920 91 / 8e-21 ZF_HD ATHB34, ZHD9 ZINC FINGER HOMEODOMAIN 9, homeobox protein 34 (.1) AT5G15210 90 / 1e-20 ZF_HD ATHB30, ZFHD3, ZHD8 ZINC FINGER HOMEODOMAIN 8, ZINC FINGER HOMEODOMAIN 3, homeobox protein 30 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010694 [exp] 103 / 4e-25 AT2G02540 215 / 5e-68 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Lus10038135 [exp] 101 / 2e-24 AT2G02540 223 / 7e-71 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Lus10010693 [exp] 90 / 9e-22 AT2G02540 104 / 7e-28 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Lus10015900 [exp] 91 / 2e-21 AT4G24660 145 / 6e-44 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Lus10014302 [exp] 92 / 6e-21 AT1G75240 176 / 9e-54 zinc-finger homeodomain 5, homeobox protein 33 (.1) Lus10026010 [exp] 91 / 8e-21 AT1G75240 172 / 2e-52 zinc-finger homeodomain 5, homeobox protein 33 (.1) Lus10031315 [exp] 88 / 2e-20 AT1G75240 137 / 9e-40 zinc-finger homeodomain 5, homeobox protein 33 (.1) Lus10037175 [exp] 83 / 1e-18 AT1G75240 86 / 2e-20 zinc-finger homeodomain 5, homeobox protein 33 (.1) Lus10030679 [exp] 82 / 1e-17 AT5G15210 145 / 2e-42 ZINC FINGER HOMEODOMAIN 8, ZINC FINGER HOMEODOMAIN 3, homeobox protein 30 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G227900 [exp] 245 / 7e-80 AT2G18350 171 / 4e-52 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1) Potri.002G035200 [exp] 243 / 7e-79 AT1G14440 169 / 2e-50 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) Potri.007G024100 [exp] 196 / 3e-60 AT1G75240 186 / 2e-56 zinc-finger homeodomain 5, homeobox protein 33 (.1) Potri.005G122500 [exp] 191 / 4e-58 AT2G18350 179 / 2e-54 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1) Potri.003G000400 [exp] 176 / 6e-53 AT1G14440 238 / 9e-78 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) Potri.004G135100 [exp] 146 / 7e-42 AT2G02540 213 / 4e-68 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Potri.004G229600 [exp] 111 / 2e-28 AT1G14440 244 / 1e-79 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) Potri.005G158800 [exp] 100 / 1e-24 AT4G24660 204 / 1e-65 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Potri.012G040900 [exp] 99 / 1e-24 AT4G24660 143 / 4e-43 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Potri.013G108900 [exp] 99 / 5e-24 AT4G24660 171 / 2e-52 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04770 [flax] [poplar] ZF-HD_dimer ZF-HD protein dimerisation region
Representative CDS sequence Show only first row Show all	>Lus10007147 pacid=23175296 polypeptide=Lus10007147 locus=Lus10007147.g ID=Lus10007147.BGIv1.0 annot-version=v1.0 ATGTCAGGTGGTGGTAGTGGTGGTGGTGGAAGGAGAGAAGGGAATCACAATGGCACCACCACTAATTTCCTCACTTACACTGCCCAACAACAACAACAGC AAACCCTAGACCACCACCGCGGCGGCGGATCTAACTCCTCCTCCAAACCTCCTCCAGCTGCCATCAGGTACCGCGAGTGCCTTAGGAACCACGCCGCCAG CGTGGGGGGAAACGTCTACGACGGGTGCGGAGAGTTCATGCCGGGGGGAGAGGAAGGCTCTCTGGAGGCCTTGAAATGCGCCGCCTGCGACTGCCACCGC AACTTCCACCGCAAAGAGATCGACGGCGAGACTGCCCCCGCCCCAGCTGCTCATATATTCAGTCCAGGGTCAAGGCGGGGTGGCAGCGGCAGTGGTGGTG GACATTTGGTCCACGCTCTCCAGCTTCCTCCTGCATTGCCTTCTCCAGTGATGCACCACCACCACCATCCTCACTTACAACAGCACCATAACCATCACCA GAGGTACCTCCATTCATCCAGCCCTCCCGCAGCTGTTCAGCCTATGAGTGTGGCCTTTGGAGGAGGAGGAGGAGGAAGTGCGGCAACTTGCGGGACCGAA TCTTCCAGCGAGGATCTGAACGCGTTCCCGAATTCAACATCTGATATGGGAATGGGGACTGTTGGAATGGGAGGGATGAGTCCGCATCCTCCGCAGTACG TGATGTCGAAGAAGAGGTTCAGGACCAAATTCACAGCTGAGCAGAAGGACAAAATGATGGAGTTTGCAGAGAAAGTCGGGTGGAGGATCAACAAGCAAGA TGAGGAGGCAGTAGAGAGATTCTGCGCCGAGGTTGGAGTAAGGAGGCAGGTGTTCAAAGTGTGGATGCATAACAACAAGAATGTCAGGAAGCAGCTGGGC ACGCCGGACGACCATCATCATCACCAGCATCTCAACCATCACCACCAAATGCGGGTCGAGGACGACGGCAACAATGGGCAGCAACAGCAGCAGCGAGGCG AGGGAATGCTGTAA
AA sequence Show only first row Show all	>Lus10007147 pacid=23175296 polypeptide=Lus10007147 locus=Lus10007147.g ID=Lus10007147.BGIv1.0 annot-version=v1.0 MSGGGSGGGGRREGNHNGTTTNFLTYTAQQQQQQTLDHHRGGGSNSSSKPPPAAIRYRECLRNHAASVGGNVYDGCGEFMPGGEEGSLEALKCAACDCHR NFHRKEIDGETAPAPAAHIFSPGSRRGGSGSGGGHLVHALQLPPALPSPVMHHHHHPHLQQHHNHHQRYLHSSSPPAAVQPMSVAFGGGGGGSAATCGTE SSSEDLNAFPNSTSDMGMGTVGMGGMSPHPPQYVMSKKRFRTKFTAEQKDKMMEFAEKVGWRINKQDEEAVERFCAEVGVRRQVFKVWMHNNKNVRKQLG TPDDHHHHQHLNHHHQMRVEDDGNNGQQQQQRGEGML

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18350	ZF_HD	ATHB24, ZHD6	ZINC FINGER HOMEODOMAIN 6, hom...		Lus10007147 [exp]	0	1
AT2G24440			selenium binding (.1)		Lus10026958 [exp]	1.4	0.9845
AT5G39760	ZF_HD	ATHB23, ZHD10	ZINC FINGER HOMEODOMAIN 10, ho...		Lus10030473 [exp]	2.2	0.9754
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10010693 [exp]	2.4	0.9889
AT1G11120			unknown protein		Lus10039796 [exp]	4.4	0.9665
AT5G67460			O-Glycosyl hydrolases family 1...		Lus10002466 [exp]	5.2	0.9806
AT4G27660			unknown protein		Lus10032928 [exp]	8.8	0.9709
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10010694 [exp]	10.0	0.9796
AT5G07280		EXS, EMS1	EXTRA SPOROGENOUS CELLS, EXCES...		Lus10038875 [exp]	10.4	0.9705
AT2G45480	GRF	ATGRF9	growth-regulating factor 9 (.1...		Lus10009234 [exp]	10.6	0.9732
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10001729 [exp]	11.4	0.9520

Compare expression of checked genes

Lus10007147 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.