Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09640 619 / 0 Translation elongation factor EF1B, gamma chain (.1.2) AT1G57720 606 / 0 Translation elongation factor EF1B, gamma chain (.1.2) AT5G17220 69 / 4e-13 GST26, TT19, ATGSTF12 TRANSPARENT TESTA 19, GLUTATHIONE S-TRANSFERASE 26, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, glutathione S-transferase phi 12 (.1) AT2G30870 68 / 5e-13 ERD13, ATGSTF4, ATGSTF10 EARLY DEHYDRATION-INDUCED 13, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 10, glutathione S-transferase PHI 10 (.1) AT3G62760 65 / 9e-12 ATGSTF13 Glutathione S-transferase family protein (.1) AT3G03190 63 / 3e-11 ATGSTF6, ATGSTF11 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) AT2G47730 62 / 1e-10 GST6, ATGSTF5, ATGSTF8 Arabidopsis thaliana glutathione S-transferase phi 8, GLUTATHIONE S-TRANSFERASE \(CLASS PHI\) 5, glutathione S-transferase phi 8 (.1) AT2G30860 60 / 3e-10 GLUTTR, ATGSTF7, ATGSTF9 glutathione S-transferase PHI 9 (.1.2) AT1G02940 54 / 9e-08 ATGSTF5 glutathione S-transferase (class phi) 5 (.1) AT1G02920 52 / 2e-07 ATGST11, GST11, ATGSTF8, ATGSTF7 ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 11, glutathione S-transferase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002537 [exp] 781 / 0 AT1G09640 634 / 0.0 Translation elongation factor EF1B, gamma chain (.1.2) Lus10002536 [exp] 780 / 0 AT1G09640 630 / 0.0 Translation elongation factor EF1B, gamma chain (.1.2) Lus10007148 [exp] 770 / 0 AT1G09640 638 / 0.0 Translation elongation factor EF1B, gamma chain (.1.2) Lus10033213 [exp] 668 / 0 AT1G57720 600 / 0.0 Translation elongation factor EF1B, gamma chain (.1.2) Lus10029815 [exp] 69 / 3e-13 AT2G30860 332 / 2e-117 glutathione S-transferase PHI 9 (.1.2) Lus10020735 [exp] 67 / 1e-12 AT2G30860 334 / 4e-118 glutathione S-transferase PHI 9 (.1.2) Lus10020736 [exp] 67 / 1e-12 AT2G30860 308 / 6e-108 glutathione S-transferase PHI 9 (.1.2) Lus10004151 [exp] 67 / 2e-12 AT2G30860 194 / 1e-62 glutathione S-transferase PHI 9 (.1.2) Lus10001419 [exp] 61 / 2e-10 AT2G30860 297 / 3e-103 glutathione S-transferase PHI 9 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G226300 [exp] 650 / 0 AT1G57720 323 / 3e-107 Translation elongation factor EF1B, gamma chain (.1.2) Potri.003G004700 [exp] 647 / 0 AT1G57720 596 / 0.0 Translation elongation factor EF1B, gamma chain (.1.2) Potri.019G077000 [exp] 644 / 0 AT1G57720 303 / 1e-99 Translation elongation factor EF1B, gamma chain (.1.2) Potri.013G103100 [exp] 133 / 6e-38 AT1G09640 115 / 2e-32 Translation elongation factor EF1B, gamma chain (.1.2) Potri.002G015100 [exp] 72 / 4e-14 AT3G03190 196 / 2e-63 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Potri.002G015200 [exp] 70 / 2e-13 AT3G03190 208 / 4e-68 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Potri.002G207093 [exp] 67 / 1e-12 AT1G02930 263 / 5e-90 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.002G207286 [exp] 66 / 3e-12 AT1G02930 263 / 4e-90 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.002G207479 [exp] 66 / 4e-12 AT1G02930 267 / 1e-91 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.002G207672 [exp] 66 / 5e-12 AT3G62760 302 / 2e-105 Glutathione S-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00647 [flax] [poplar] EF1G Elongation factor 1 gamma, conserved domain CL0172 [flax] [poplar] Thioredoxin PF02798 [flax] [poplar] GST_N Glutathione S-transferase, N-terminal domain CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10007150 pacid=23175301 polypeptide=Lus10007150 locus=Lus10007150.g ID=Lus10007150.BGIv1.0 annot-version=v1.0 ATGGCTGCTATCTGCCAGCCAATCTCCACCTGGCTTAGAGATGGTGGCGGTGGGGGCGGCGATAGTGATGGTGATGGGGCATCTACATTTAAGGTTGTGG AGCCGGAAAAAGTGAAGGGGAAGGTATTGCACGGTGGGAACACCAACAAAAATGTTTTCAAAACTCTGATTTCAGCAGAGTATTCAGGGGTGAAGGTTGA TTTGGTTAAGAATTTTCAGATGGGTGTCTCCAACAAGACCCCTGAATATCTAAAGCTGAATCCTATTGGCAAGGTTCCAGTCTTGGAGACTCCTGAAGGT CCCATATTCGAGAGCAATGCTATTGCTCGATATGTGACCAAGCTGAAGGCGGACAATCTTCTTTATGGAAGCTCGCTAATTGAATATGCTCATATAGAGC AGTGGATTGACTTTGCGTCAATGGAGATTGATGCCAATGTTGCTAAATGGTTGTATCCCAGATTGGGGTTTGTCCCATTCCTCGCCCCTGCTGAGGAAAC TGCTATTTCAGCATTGAAGAGAGCTCTTGATGCGTTGAACTCGTACCTTGCCACAACCACTTTCTTGGTTGGGCATTCTGTTACCTTAGCCGATATCATA CTCACATGTAATCTGCACATGGGATTCTCTTGGATCCTGACAAAGAGCTTTACCTCAGCATTTCCTCACGTCGAGAGATACTTCTGGACCATCGTTAATC AACCAAATTTCAAGAAGGTAATGGGGGAAGTGAAGCAAGCTGAGTCAGTCCCTGCTGTTGAGTCTGGAAAGAAACCAGCGCAGGCAAAGGAAAAGGCCAA GCCCAAGCCCAAGGAGGAAATTAAGAAGGAAGTAGCTAAACCCAAGTCAGAGGCTGTTGCAGAAGAGGATGGGCCGGCGCCAAAGCCGAAAGCAAAGAAC CCCCTCGACTTGCTGCCACCTAGTAAGATGATACTAGACGAGTGGAAGAGGCTCTACTCCAACACTAAGACCAATTTCCGCGAGGTGGCAATCAAAGGGT TTTGGGACATGTACGATCCCGAGGGATACTCACTGTGGTTCTGTGAGTACAAGTACAACGATGAGAATACAGTCTCATTTGTCACCCTTAACAAGGTTGG TGGGTTTCTCCAGAGGATGGATCTTGCTCGCAAGTATGCATTTGGCAAGATGCTGGTAATTGGATCTGAAGCACCATTCAAGGTGAAGGGATTGTGGCTA TTCCGTGGGCAGGAGGTGCCTCAGTTTGTTATAGATGAGTGCTACGACATGGAGCTGTACGAGTGGAAGAAGGTAGACATCTCCGATGAAGCCCAAAAGG AGCGAGTGAACCAGATGATTGAAGACCAAGAACCTTTCGAGGGAGAGGCTCTCCTAGATGCTAAATGCTTCAAGTAG
AA sequence Show only first row Show all	>Lus10007150 pacid=23175301 polypeptide=Lus10007150 locus=Lus10007150.g ID=Lus10007150.BGIv1.0 annot-version=v1.0 MAAICQPISTWLRDGGGGGGDSDGDGASTFKVVEPEKVKGKVLHGGNTNKNVFKTLISAEYSGVKVDLVKNFQMGVSNKTPEYLKLNPIGKVPVLETPEG PIFESNAIARYVTKLKADNLLYGSSLIEYAHIEQWIDFASMEIDANVAKWLYPRLGFVPFLAPAEETAISALKRALDALNSYLATTTFLVGHSVTLADII LTCNLHMGFSWILTKSFTSAFPHVERYFWTIVNQPNFKKVMGEVKQAESVPAVESGKKPAQAKEKAKPKPKEEIKKEVAKPKSEAVAEEDGPAPKPKAKN PLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCEYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEAPFKVKGLWL FRGQEVPQFVIDECYDMELYEWKKVDISDEAQKERVNQMIEDQEPFEGEALLDAKCFK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09640			Translation elongation factor ...		Lus10007150 [exp]	0	1
AT5G27850			Ribosomal protein L18e/L15 sup...		Lus10029879 [exp]	8.0	0.7686
AT5G24510			60S acidic ribosomal protein f...		Lus10002680 [exp]	8.7	0.7539
AT4G31790			Tetrapyrrole (Corrin/Porphyrin...		Lus10034516 [exp]	8.8	0.7432
AT4G25740			RNA binding Plectin/S10 domain...		Lus10014966 [exp]	9.9	0.7099
AT3G56150		ATTIF3C1, ATEIF...	eukaryotic translation initiat...		Lus10039984 [exp]	14.0	0.7618
AT5G27700			Ribosomal protein S21e (.1)		Lus10020645 [exp]	16.6	0.7464
AT1G50920			Nucleolar GTP-binding protein ...		Lus10027370 [exp]	26.3	0.7411
AT1G73080		ATPEPR1, PEPR1	PEP1 receptor 1 (.1)		Lus10039030 [exp]	26.5	0.6821
AT3G05560			Ribosomal L22e protein family ...		Lus10026555 [exp]	30.6	0.7060
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10015063 [exp]	31.0	0.7115

Compare expression of checked genes

Lus10007150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.