Plant FIBer expression Database

Lus10007154 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G42740 953 / 0 Sugar isomerase (SIS) family protein (.1)
AT4G24620 153 / 8e-40 PGI1 phosphoglucose isomerase 1 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010808
[exp]
876 / 0 AT5G42740 440 / 3e-149 Sugar isomerase (SIS) family protein (.1)
Lus10000767
[exp]
139 / 9e-35 AT4G24620 1018 / 0.0 phosphoglucose isomerase 1 (.1.2)
Lus10015959
[exp]
112 / 6e-26 AT4G24620 959 / 0.0 phosphoglucose isomerase 1 (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G118900
[exp]
1008 / 0 AT5G42740 973 / 0.0 Sugar isomerase (SIS) family protein (.1)
Potri.002G104000
[exp]
153 / 1e-39 AT4G24620 1006 / 0.0 phosphoglucose isomerase 1 (.1.2)
Potri.002G262101
[exp]
71 / 4e-15 AT5G42740 71 / 6e-16 Sugar isomerase (SIS) family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0067 SIS PF00342 PGI Phosphoglucose isomerase
Representative CDS sequence
>Lus10007154 pacid=23140470 polypeptide=Lus10007154 locus=Lus10007154.g ID=Lus10007154.BGIv1.0 annot-version=v1.0
ATGGCTCCTTCGGCTCTGATATGCGATATTCAACCCTGGAAGGACTTGAAGGCACATGTTGAGGACATTAAGAAGACTCACCTGCGGGAGTTATTGAATG
ACAATGACCGATGCACGGAAATGCTGCTTGAGTTCGAAGGTATAACACTGGACTACTCCCGCCAGCAAGCCACTCTTGAAACATTGAATAAACTGCAGAA
GCTGGCAGAGGGTGCACATCTGAAAGATAAAATCAACCGCATGTTTAACGGGGATCATATAAACAGCACGGAGAATAGGTCAGTTCTCCATATGGCTCTT
CGAGCTCCAAGAGATGCAGTAATTAACGGTGATGGCAAGAATGTTGTGCCAGATGTTTGGAAAGTTTTGGACCAGATCAAGGATTTTTCTGAGAAAGTGC
GGAATGGTTACTGGGTTGGAGCCACTGGGAAACCTTTAACCGATGTTATTTCTGTTGGCATTGGTGGCAGCTTTTTAGGTCCTCTTTTTGTGCATAATGC
CCTTCAAACAGATCCGGAGGCAAGCAAGCAAGCGAAGGGGCGCCAACTGCGGTTTCTTGCAAATGTGGATCCAATTGATGTTGCTAGAAATATAACTGGC
CTAAACCCTGAAACAACATTGGTTGTTGTGGTTTCAAAGACTTTCACCACTGCTGAAACAATGTTAAACGCTCGGACATTGAGAACTTGGATTTCAAAAG
GACTCGGACCTTCTGCAGTTGCAAAACATATGGTGGCTGTTAGCACAAACCTCACACTAGTAGAAAAGTTTGGAATTGATCCCAAGAATGCTTTTGCGTT
CTGGGACTGGGTTGGTGGCAGGTATAGTGTTTGCAGTGCTGTCGGTGTGGTGCCTTTGTCTCTTCAGTATGGTTTCTCAGTGGTTGAAAAGTTCTTGAAA
GGAGCATGGAGCATCGACCAACACTTCTCTTCCGCACCATTTGAGAAAAATCTTCCAGTGCTCTTAGGTCTATTGAGCGTGTGGAATGTTTCATTTCTTG
GATACCCTGCGAGAGCCATCCTGCCTTATTCCCAAGCCCTGGAGAAATTTGCTCCTCATATTCAACAGGTTAGCATGGAAAGTAATGGCAAGGGTGTCTC
GATTGATGGGGTGCCACTTCCGCTTGAGACTGGTGAAATTGATTTTGGTGAGCCTGGAACAAATGGTCAACACAGCTTTTATCAACTAATTCACCAGGGA
CGAGTCATTCCTTGTGATTTTATTGGTGTTATAAAGAGTCAGCAGCCAGTCTACTTAGAAGAGGAGATCGTCAACAATCATGATGAACTCATGTCTAACT
TTTTCGCTCAGCCAGATGCACTTGCATATGGAAAGACACCGGAACAGCTGCTAAAGGAGAATGTGCCTGATCATCTTATTCCTCACAAGACCTTTTCTGG
GAACAGACCTTCGCTCAGCCTTCTGCTTTCTGGTTTGGATGCATATAAAATTGGACAGTTGCTGGCGATCTATGAACATCGAGTAGCCGTACAAGGCTTC
ATATGGGGAATCAATTCATTCGACCAGTGGGGAGTCGAGTTAGGGAAGTCATTGGCTACTCAAGTTAGAAAGCAGCTCCATGCATCTCGAACGAAGAAAG
AAAAAGTCCAGGGCTTCAACTCCAGCACTACAAGATTGTTGAATAAATACCTAGAGGAGAGCTCCGATGTTCCAGCTATTCCTTCAACCCTTCTTCCAAA
GATATAA
AA sequence
>Lus10007154 pacid=23140470 polypeptide=Lus10007154 locus=Lus10007154.g ID=Lus10007154.BGIv1.0 annot-version=v1.0
MAPSALICDIQPWKDLKAHVEDIKKTHLRELLNDNDRCTEMLLEFEGITLDYSRQQATLETLNKLQKLAEGAHLKDKINRMFNGDHINSTENRSVLHMAL
RAPRDAVINGDGKNVVPDVWKVLDQIKDFSEKVRNGYWVGATGKPLTDVISVGIGGSFLGPLFVHNALQTDPEASKQAKGRQLRFLANVDPIDVARNITG
LNPETTLVVVVSKTFTTAETMLNARTLRTWISKGLGPSAVAKHMVAVSTNLTLVEKFGIDPKNAFAFWDWVGGRYSVCSAVGVVPLSLQYGFSVVEKFLK
GAWSIDQHFSSAPFEKNLPVLLGLLSVWNVSFLGYPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPLETGEIDFGEPGTNGQHSFYQLIHQG
RVIPCDFIGVIKSQQPVYLEEEIVNNHDELMSNFFAQPDALAYGKTPEQLLKENVPDHLIPHKTFSGNRPSLSLLLSGLDAYKIGQLLAIYEHRVAVQGF
IWGINSFDQWGVELGKSLATQVRKQLHASRTKKEKVQGFNSSTTRLLNKYLEESSDVPAIPSTLLPKI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G42740 Sugar isomerase (SIS) family p... Lus10007154
[exp]
0 1
AT3G52870 IQ calmodulin-binding motif fa... Lus10035595
[exp]
6.4 0.9334
AT3G09290 C2H2ZnF TAC1 telomerase activator1 (.1) Lus10010870
[exp]
6.9 0.9326
AT5G15130 WRKY ATWRKY72, WRKY7... ARABIDOPSIS THALIANA WRKY DNA-... Lus10036725
[exp]
10.0 0.9260
AT3G08030 Protein of unknown function, D... Lus10019723
[exp]
14.8 0.9314
AT3G12160 AtRABA4d ARABIDOPSIS THALIANA RAB GTPAS... Lus10021023
[exp]
18.5 0.9253
AT5G11420 Protein of unknown function, D... Lus10019724
[exp]
20.3 0.9277
AT3G26040 HXXXD-type acyl-transferase fa... Lus10000021
[exp]
23.0 0.8427
AT1G65890 AAE12 acyl activating enzyme 12 (.1) Lus10031367
[exp]
24.0 0.8689
AT4G21390 B120 S-locus lectin protein kinase ... Lus10006742
[exp]
29.7 0.9187
AT2G26230 uricase / urate oxidase / nodu... Lus10028868
[exp]
29.9 0.9193

Lus10007154 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.