Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65650 135 / 3e-41 Protein of unknown function (DUF1195) (.1) AT4G36660 134 / 7e-41 Protein of unknown function (DUF1195) (.1) AT1G19380 106 / 5e-30 Protein of unknown function (DUF1195) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010810 [exp] 225 / 1e-76 AT4G36660 152 / 3e-47 Protein of unknown function (DUF1195) (.1) Lus10014322 [exp] 134 / 1e-40 AT5G65650 244 / 3e-83 Protein of unknown function (DUF1195) (.1) Lus10026030 [exp] 128 / 4e-38 AT4G36660 239 / 1e-81 Protein of unknown function (DUF1195) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G027700 [exp] 141 / 1e-43 AT5G65650 206 / 2e-68 Protein of unknown function (DUF1195) (.1) Potri.005G125000 [exp] 137 / 4e-42 AT5G65650 204 / 1e-67 Protein of unknown function (DUF1195) (.1) Potri.014G181600 [exp] 133 / 3e-40 AT4G36660 157 / 4e-49 Protein of unknown function (DUF1195) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06708 [flax] [poplar] DUF1195 Protein of unknown function (DUF1195)
Representative CDS sequence Show only first row Show all	>Lus10007156 pacid=23140468 polypeptide=Lus10007156 locus=Lus10007156.g ID=Lus10007156.BGIv1.0 annot-version=v1.0 ATGAAAGACACTATATCTCCCTCTGAAGCTCCCCTTCTCCCCACCACCTCTGCAAGGAGAGACAACCCTGATTCCAAAAGTGCTTACAAGTTGTGGGTCA TCTCCCTACTCCTCCTCCTTGCTTTCTGGTCCATGCTCACCGGCACCGTCACTCTCAAATGGTCTACTGGTAGCCTCACCCGTCTTTCCGACGAACTCGA CATACCCATCCACTATGATTTCGACGTCCTCGAAGTTGCGGAGAGCGAGAAAGTGGTGAAGCATATGTGGGATGTTTATATGCAGAGCAGCAGCAGCAGT AAGAGGAGACTGCCTCGTTTCTGGGAAGAAGCTTTCGAAGCTGGTTACGAGGCTTTGGCTAGTGATTTGGCTGCTGTTCGTGATTCTGCTGTTTCTGAGA TCGCCAAGATGTCTCTTTTCTCTGCCGAGCAGCACCCTATGTAA
AA sequence Show only first row Show all	>Lus10007156 pacid=23140468 polypeptide=Lus10007156 locus=Lus10007156.g ID=Lus10007156.BGIv1.0 annot-version=v1.0 MKDTISPSEAPLLPTTSARRDNPDSKSAYKLWVISLLLLLAFWSMLTGTVTLKWSTGSLTRLSDELDIPIHYDFDVLEVAESEKVVKHMWDVYMQSSSSS KRRLPRFWEEAFEAGYEALASDLAAVRDSAVSEIAKMSLFSAEQHPM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36660			Protein of unknown function (D...		Lus10007156 [exp]	0	1
AT4G36660			Protein of unknown function (D...		Lus10010810 [exp]	1.0	0.8702
AT5G53310			myosin heavy chain-related (.1...		Lus10039322 [exp]	2.0	0.8104
AT5G50000			Protein kinase superfamily pro...		Lus10002368 [exp]	2.8	0.7620
AT4G40010		SNRK2-7, SNRK2....	SUCROSE NONFERMENTING 1-RELATE...		Lus10015676 [exp]	5.3	0.7853
AT3G59350			Protein kinase superfamily pro...		Lus10025496 [exp]	5.5	0.7958
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Lus10041410 [exp]	14.5	0.7616
AT5G52430			hydroxyproline-rich glycoprote...		Lus10039253 [exp]	14.9	0.7405
AT5G10290			leucine-rich repeat transmembr...		Lus10023146 [exp]	17.1	0.7428
AT1G15060			Uncharacterised conserved prot...		Lus10043481 [exp]	19.4	0.7451
AT5G52210		ATGB1, ATARLB1	GTP-binding protein 1 (.1.2)		Lus10038871 [exp]	20.1	0.7054

Compare expression of checked genes

Lus10007156 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.