Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18500 57 / 2e-11 OFP ATOFP7, OFP7 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) AT5G19650 55 / 7e-11 OFP ATOFP8, OFP8 ovate family protein 8 (.1) AT2G30400 50 / 8e-09 OFP ATOFP2, OFP2 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 2, ovate family protein 2 (.1) AT3G52525 47 / 3e-08 OFP ATOFP6, OFP6 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) AT5G01840 47 / 8e-08 OFP AtOFP1 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1) AT5G58360 45 / 7e-07 OFP ATOFP3, OFP3 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 3, ovate family protein 3 (.1) AT1G06920 45 / 7e-07 OFP ATOFP4, OFP4 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) AT4G18830 44 / 2e-06 OFP ATOFP5, OFP5 ovate family protein 5 (.1) AT2G36026 42 / 3e-06 OFP Ovate family protein (.1) AT2G36030 39 / 2e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043243 [exp] 62 / 7e-13 AT5G19650 105 / 4e-27 ovate family protein 8 (.1) Lus10011092 [exp] 59 / 5e-12 AT5G19650 99 / 3e-24 ovate family protein 8 (.1) Lus10041730 [exp] 57 / 3e-11 AT2G18500 134 / 3e-37 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) Lus10021302 [exp] 56 / 4e-11 AT3G52525 120 / 2e-34 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) Lus10025241 [exp] 53 / 8e-10 AT1G06920 112 / 2e-28 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Lus10006092 [exp] 53 / 9e-10 AT5G01840 121 / 5e-32 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1) Lus10013318 [exp] 53 / 9e-10 AT3G52525 82 / 4e-19 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) Lus10014164 [exp] 52 / 1e-09 AT1G06920 104 / 3e-27 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Lus10005206 [exp] 52 / 2e-09 AT3G52525 82 / 2e-19 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G262500 [exp] 74 / 2e-17 AT5G19650 94 / 2e-22 ovate family protein 8 (.1) Potri.007G028000 [exp] 64 / 6e-14 AT2G18500 114 / 4e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) Potri.005G125200 [exp] 62 / 5e-13 AT2G18500 111 / 7e-28 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) Potri.018G080100 [exp] 60 / 2e-12 AT5G19650 107 / 8e-28 ovate family protein 8 (.1) Potri.006G156176 [exp] 60 / 2e-12 AT5G19650 104 / 8e-27 ovate family protein 8 (.1) Potri.016G072800 [exp] 56 / 3e-11 AT2G36026 118 / 1e-33 Ovate family protein (.1) Potri.006G205400 [exp] 54 / 2e-10 AT2G36026 115 / 3e-32 Ovate family protein (.1) Potri.009G161700 [exp] 51 / 2e-09 AT3G52525 61 / 6e-12 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) Potri.004G062100 [exp] 51 / 3e-09 AT4G18830 104 / 9e-25 ovate family protein 5 (.1) Potri.004G200500 [exp] 50 / 4e-09 AT3G52525 69 / 4e-15 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04844 [flax] [poplar] Ovate Transcriptional repressor, ovate
Representative CDS sequence Show only first row Show all	>Lus10007159 pacid=23140469 polypeptide=Lus10007159 locus=Lus10007159.g ID=Lus10007159.BGIv1.0 annot-version=v1.0 ATGGGGGAAGCGATGGCTGTAGTGAAGAAATCGTCGAATCCGAAAGAGGATTTCAAGAGGTCGATGCTGGAGATGATATCGGAGAAGCAGATATATCAAG GCAAGGAGTTAGAGGAGCTGTTGCAGTGCCTGCTGTCCCTGAATTCAATTCAGTATCATGATGATATTGTGGAGGCCTTCTCCGATGTTTGGAAAGTGCT TTTCCTGTGA
AA sequence Show only first row Show all	>Lus10007159 pacid=23140469 polypeptide=Lus10007159 locus=Lus10007159.g ID=Lus10007159.BGIv1.0 annot-version=v1.0 MGEAMAVVKKSSNPKEDFKRSMLEMISEKQIYQGKELEELLQCLLSLNSIQYHDDIVEAFSDVWKVLFL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52525	OFP	ATOFP6, OFP6	ARABIDOPSIS THALIANA OVATE FAM...		Lus10007159 [exp]	0	1
AT5G10695			unknown protein		Lus10042440 [exp]	3.7	0.8084
AT5G37670		HSP15.7CI	HSP20-like chaperones superfam...		Lus10004039 [exp]	7.2	0.7580
					Lus10005955 [exp]	13.4	0.7342
AT4G10250		ATHSP22.0	HSP20-like chaperones superfam...		Lus10000932 [exp]	19.6	0.7202
AT2G26150	HSF	ATHSFA2	heat shock transcription facto...		Lus10039134 [exp]	20.3	0.7189
AT4G27290			S-locus lectin protein kinase ...		Lus10039733 [exp]	21.6	0.6351
AT3G02230		ATRGP1, RGP1	ARABIDOPSIS THALIANA REVERSIBL...		Lus10034376 [exp]	22.8	0.7164
AT1G52560			HSP20-like chaperones superfam...		Lus10023653 [exp]	23.5	0.7211
AT4G39250	MYB	RSM2, ATRL1	RADIALIS-LIKE SANT/MYB 2, RAD-...		Lus10014307 [exp]	25.5	0.6937
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10017826 [exp]	26.1	0.7358

Compare expression of checked genes

Lus10007159 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.