Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42960 301 / 3e-98 unknown protein AT1G45170 293 / 2e-95 unknown protein AT1G75150 179 / 3e-47 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010814 [exp] 729 / 0 AT1G75150 219 / 9e-61 unknown protein Lus10010813 [exp] 382 / 7e-130 AT5G42960 294 / 3e-102 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G181000 [exp] 316 / 4e-104 AT5G42960 331 / 7e-117 unknown protein Potri.002G262700 [exp] 310 / 1e-101 AT1G45170 327 / 3e-115 unknown protein Potri.002G262800 [exp] 321 / 8e-99 AT1G75150 223 / 3e-62 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007162 pacid=23140472 polypeptide=Lus10007162 locus=Lus10007162.g ID=Lus10007162.BGIv1.0 annot-version=v1.0 ATGAAGGCGTCTTTCAAGGGAAAATACGACAACGGCAAGTCTACCGCCGCCACTACTCTTGTCCTTAACGCCGGCGATGTTAAGCTCCGAGCTTCCCTCA CGGACGCCACCGTCACTAATGGCCCCAGCCTCAACGGTTTGGCTTTAGCCGTCGAGAAGCCCGGATTCTTCATCCTCGACTACAACGTCCCCAAGCAGGA TGTCCGTTTCCAGTTCATGAATACTGTCAGGTTTGCGGATAAGCCCTTGAATCTGACTTACATTCACAGCAGAGGGGATAACAGGACTATGTTGGACGGA AGTCTTGTAATTGATTCCGCTAACAAGGTTTCTGCTAACTATGTGGTTGGTACCAGCAACTGCAAGTTGAAGTACTCGTACAATCATGGAGGGTTGACCA CGTTCGAGCCTACTTATGATTTGGCAAAGAATACATGGGATTTTGCAGTCTCACGAAGAGTTTATCAGGATGATGTATGTAGGGCTACGTATCAAACCTC AAGCAAGCTATTGGGATTAGAGTGGTCAAGGAATTCAAAGTACAATGGGAAGTTTAAGGATAGGAGAAATCGTCTTAAGGAATTGCGTGCTGAATCTCAA AGGTTGTTAAGAGAGACTACAGATGCATCGTTTAAACCTCAGCCTCTAATTCGGAAGCCTGTTTCCACGGTTTTGGAGAAGATTCGGCAGCGGAAGCTTG AGTTATTGAAAAGATCCACCAGAGTAAATCTTTCTCCAGCTGATGACAATTGTGCTTCTCCTGGGGATTTCTCTGTGAACCTGGATTTTGTGGATGATCA AGTTGAGGACATTGAGTATTCATACTTTTCCACATCAGATGGTGCAAAAGTTTTGGAGAAGCCTGCTGATATGGCCGAAAAGTCTGATGTTCATGATGGA GAAGGATTGAAGGATACTGAAAGTCCTAACACTAGAAGTTTTGCGCCTGAAATAGATCTCCTATTTGATTCACAACCAAGTGACAGTAAAGGTGACTTGT TTGATGAGACACCTAGCAATCCTCTAGAAGAAGTTCTTGCCCCATCGTTACTCACAATGAAATTGAAATTTGACTCTGCTTACCCTCATGATTCTTCCTC GGATGAAGAGGAAGACAATGACAAGGAAAATGTTGATCCCCATCGTTCTGGGGCTGTCGAGTTGTCTCGGGATCCAATGAAAGCTTTCATTGATGAGGAA GCCGAGGAAGAGGATGACAGTGATAATGACTTGCATCGCTTCCAAGACAATGAGGAAGACGAGGATGACCTTGACTTGGAAGAGCTCAATGATATAATAG CAACTGGATATGAGGAGCAGCCTGTTGATGGAGAAATGCGCAATGAACTTCATCAGAAGTGGCTTGAGCAACAGGATGCTGTTGGAACAGAACACGTCAT GAAGAGACTGAACTGTGGCGGTTCCAAACTGAAGGATCCAACATTGCTCGAGGAAAAAGAAGAGGGAAGTAAATGTGAAGGAGACTTTCTTGATGACACT GCAGAGGAAAGCCCTGTTACTAGAAATGTGATGCAAATGCACTTAAAGAAAGCCAAAGAGATGATCCACCAAATGTTTACAGATAACGATGATCTCTATG TTTCATCAGATGATGAGGAAACTGAAAGAAGCCTTGTGAAACAGCGGATGCTGGTCAATAGGGTGAGTGCTTGGCGACAACTTGAATTATTATCCCCCCA CCCCACTATCTCACAGTTGCAAACGAAATGTATACAGGAACAGGAGGATGAAGCTCTGCTTGTACCACCAGCGGAGGATGAAAGCTCCAACGACACATTT AGAATAAAGAAGATGAACACTGTACTTGACAGTAAGAAGAAATCCAAGATAGCATCCTACTTTAATCAGCTATCTATTGGAGGCAACAAAGCTAAAATGT CTAAGTCTTCTTTCCTAAATCGTGGGGCAAAAAATGGGAATCAATCATTCCAAAAGAAGGGAACGAGCATATTGCGGTCTTTCATCTTTGAAAGAGACGA CAGCAATAATAGCAAGGACACGGTTTCAATGATAGATGATTCTTCAGACTCGGTAAGTTCCAATCCATCGCCTTAG
AA sequence Show only first row Show all	>Lus10007162 pacid=23140472 polypeptide=Lus10007162 locus=Lus10007162.g ID=Lus10007162.BGIv1.0 annot-version=v1.0 MKASFKGKYDNGKSTAATTLVLNAGDVKLRASLTDATVTNGPSLNGLALAVEKPGFFILDYNVPKQDVRFQFMNTVRFADKPLNLTYIHSRGDNRTMLDG SLVIDSANKVSANYVVGTSNCKLKYSYNHGGLTTFEPTYDLAKNTWDFAVSRRVYQDDVCRATYQTSSKLLGLEWSRNSKYNGKFKDRRNRLKELRAESQ RLLRETTDASFKPQPLIRKPVSTVLEKIRQRKLELLKRSTRVNLSPADDNCASPGDFSVNLDFVDDQVEDIEYSYFSTSDGAKVLEKPADMAEKSDVHDG EGLKDTESPNTRSFAPEIDLLFDSQPSDSKGDLFDETPSNPLEEVLAPSLLTMKLKFDSAYPHDSSSDEEEDNDKENVDPHRSGAVELSRDPMKAFIDEE AEEEDDSDNDLHRFQDNEEDEDDLDLEELNDIIATGYEEQPVDGEMRNELHQKWLEQQDAVGTEHVMKRLNCGGSKLKDPTLLEEKEEGSKCEGDFLDDT AEESPVTRNVMQMHLKKAKEMIHQMFTDNDDLYVSSDDEETERSLVKQRMLVNRVSAWRQLELLSPHPTISQLQTKCIQEQEDEALLVPPAEDESSNDTF RIKKMNTVLDSKKKSKIASYFNQLSIGGNKAKMSKSSFLNRGAKNGNQSFQKKGTSILRSFIFERDDSNNSKDTVSMIDDSSDSVSSNPSP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42960			unknown protein		Lus10007162 [exp]	0	1
AT5G22330		ATTIP49A, RIN1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10011283 [exp]	1.4	0.9422
AT1G03860		ATPHB2	prohibitin 2 (.1.2.3)		Lus10021978 [exp]	3.7	0.9463
AT5G19350			RNA-binding (RRM/RBD/RNP motif...		Lus10031844 [exp]	4.0	0.9393
AT3G16310			mitotic phosphoprotein N' end ...		Lus10011431 [exp]	7.7	0.9318
AT4G00360		ATT1, CYP86A2	"cytochrome P450, family 86, s...		Lus10014768 [exp]	9.4	0.9063
AT3G63250		HMT-2, ATHMT-2 ...	HOMOCYSTEINE METHYLTRANSFERASE...		Lus10006901 [exp]	9.5	0.9400
AT3G04610		FLK	flowering locus KH domain, RNA...		Lus10006565 [exp]	9.6	0.9419
AT1G04170		EIF2 GAMMA, EIF...	eukaryotic translation initiat...		Lus10024802 [exp]	13.0	0.9415
AT4G19006			Proteasome component (PCI) dom...		Lus10012120 [exp]	13.0	0.9281
AT5G49560			Putative methyltransferase fam...		Lus10014309 [exp]	13.8	0.9055

Compare expression of checked genes

Lus10007162 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.