Plant FIBer expression Database

Lus10007163 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G75140 581 / 0 unknown protein
AT1G19370 558 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010815
[exp]
1083 / 0 AT1G75140 648 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G180900
[exp]
674 / 0 AT1G19370 660 / 0.0 unknown protein
Potri.002G262900
[exp]
664 / 0 AT1G75140 645 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10007163 pacid=23140464 polypeptide=Lus10007163 locus=Lus10007163.g ID=Lus10007163.BGIv1.0 annot-version=v1.0
ATGGAAGACACCCAGAAAACAGGCAAGTTGTTCTTCCTGCTGCTTACTATTCTTATTCTAATACTCCTCTCTTCTCCACACCTTACTTACTCCTCCTCCA
CCCAAGAGGAAGATGATGAATCCATCAAATCCGAGCCTGGAAACCAATTGATCCAACAACAGGAAGTTTTACTACAGAGGATGGAAGAATTAGCCAGGAA
TTTAGGCGATCTAGTTTCTAGGTTAGAACCCTTGTTGTCTGAATCATCACCGCCGACCAAATCCGGTGAAAGCGGAAATAACGTTAGGAATGAAAACAAA
GTGAAACCGGTTTCCGTTACTAAGTACAGTACTCCTCTTTGGTCAGAGAGGTTTCAATTTGTTTCTGCTGTGAAGTTGGATTCGATGACGACGTGTCTAA
ATGTGTTGCCATTTCGAGATTCCGAAGGCCTCAGCAAGTACATTGCTGTTGGAGATGATCGAGGCAAGGTTTATGTGTTCTTGAGAACTGGGGATCTCTT
GACTGAGTTTGACACTTTGGTGGAATCTCCTGTCACCTCCATCGTCTCTTATCTTTCTGTTTACAAGAACGAGAGCGTTTTGGTGACGGGTCATCAGAAT
GGCGAGATTCTAGGGCACAAGATCGTGGAGCGATCCAACGGGGAAGAGTTCACAACCTCTTTGGTCATGGAAAGTGTATGCAAGTTCATGCATGGGGAGG
AAGGTTTGGCCGTGGGGACTCTGGACGTTCACCATGTCGGGAGGTTGAGGTACATTTTGTCATCTGCTGCGAGTGGCAAGATCAGGGTTTTCAAAGAGGA
TGGGAAGCTTCACGGTTCGGTCACGCCATCGAGCAGACCCCTCGCATTCTTGAAGCAAAGATTGTTGTTCTTGACAGAAAGTGGCGCAGGGTCGTTGGAT
TTGAGGAGCATGAAGATTCGGGAATCTGATTGTGAAGGATTGAATCATTCCCTTGTTCGAAACTATGTGTTTGATGTCACTGAAAGGTCCAAGGCGTATG
GATTCACGTCGGATGGACATTTGATTCATGTTCTATTATTAGGAGATGCGATGAACTTCAAGTGCAGGGTTAGGTCGAAGAAGAAGCCAGACAAGATTGA
TGAACCACCCGTTGCGGCTATGCAAGCCATTAAAGGGTATCTACTTCTTGTCAGCGAAGAAAGCGTCTTTGTGTACAATGTTTCTTCGCATCATTATGTC
CGAGTCGGTGGCCCTAGGCCGATCTTCTCTGCTGGTTTGGATGAGATCAGATCATCATTTCTTAGTTATCAACTCACAGCTGCGGAAATAGACTCGCCAA
AGGCAATGCCATTGATAGCAAGTGATCGTGAAAAGCTAGTTGTTGTCGGACTAGGGAATGGTTATGTAGGGATATATCATTCTAGCCTCCCTGTGTTCAA
AGGAGAGTTCAACACAATGCTGTGGACAGGTCCGGTACTGATCTTCATCCTCTTCCTGTTTGGGGCATGGCAATTCTTTGCCAAGAAAAAGGAAGCTCTT
ACTTCATGGGGGCCGGACGATCCTTTTACAACCAACAACACATCATCTGCGGCCAACTCTACCCCTATAGGGTCCGGTGAGCGGTCATTTGTAGAGCAGC
CTTCTTCAAGGAGTGGTGGTGGTGGGATCATGGACTTGAGAGCTGATGGGATCCGAGGGCCACCAAGGAGGTATGCTTCTCCACCTCGGTATGCAGGTGG
GACGACAGCGAGCGGTTTTAGGCCAGGTTCGGTTGATGCCATACCTTCGAGACCTAGCTCAGTTGATCCGAATTACAGAACGTCTTCTTCGGAACTCAAG
TATAGAGCGGCACATATGGAGCCACCAGGTTTCCCTAAAAGAAGGGAGAATATGTTTGTGAACAACCAGGATGTTGATGAAGGAAACTAA
AA sequence
>Lus10007163 pacid=23140464 polypeptide=Lus10007163 locus=Lus10007163.g ID=Lus10007163.BGIv1.0 annot-version=v1.0
MEDTQKTGKLFFLLLTILILILLSSPHLTYSSSTQEEDDESIKSEPGNQLIQQQEVLLQRMEELARNLGDLVSRLEPLLSESSPPTKSGESGNNVRNENK
VKPVSVTKYSTPLWSERFQFVSAVKLDSMTTCLNVLPFRDSEGLSKYIAVGDDRGKVYVFLRTGDLLTEFDTLVESPVTSIVSYLSVYKNESVLVTGHQN
GEILGHKIVERSNGEEFTTSLVMESVCKFMHGEEGLAVGTLDVHHVGRLRYILSSAASGKIRVFKEDGKLHGSVTPSSRPLAFLKQRLLFLTESGAGSLD
LRSMKIRESDCEGLNHSLVRNYVFDVTERSKAYGFTSDGHLIHVLLLGDAMNFKCRVRSKKKPDKIDEPPVAAMQAIKGYLLLVSEESVFVYNVSSHHYV
RVGGPRPIFSAGLDEIRSSFLSYQLTAAEIDSPKAMPLIASDREKLVVVGLGNGYVGIYHSSLPVFKGEFNTMLWTGPVLIFILFLFGAWQFFAKKKEAL
TSWGPDDPFTTNNTSSAANSTPIGSGERSFVEQPSSRSGGGGIMDLRADGIRGPPRRYASPPRYAGGTTASGFRPGSVDAIPSRPSSVDPNYRTSSSELK
YRAAHMEPPGFPKRRENMFVNNQDVDEGN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G75140 unknown protein Lus10007163
[exp]
0 1
AT3G07810 RNA-binding (RRM/RBD/RNP motif... Lus10039053
[exp]
3.7 0.8810
AT3G62720 ATXT1, XXT1 XYG XYLOSYLTRANSFERASE 1, xylo... Lus10037514
[exp]
4.2 0.8759
AT3G27030 unknown protein Lus10032030
[exp]
4.7 0.8176
AT1G26850 S-adenosyl-L-methionine-depend... Lus10030479
[exp]
12.6 0.8459
AT5G57460 unknown protein Lus10028963
[exp]
13.0 0.8612
AT1G52420 UDP-Glycosyltransferase superf... Lus10011469
[exp]
13.6 0.8066
AT5G57460 unknown protein Lus10007798
[exp]
13.9 0.8357
AT4G01400 unknown protein Lus10002677
[exp]
14.1 0.8491
AT5G19180 ECR1 E1 C-terminal related 1 (.1) Lus10034043
[exp]
15.5 0.8238
AT2G20370 AtMUR3, MUR3, K... MURUS 3, KATAMARI 1, Exostosin... Lus10022862
[exp]
16.4 0.8397

Lus10007163 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.