Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42970 563 / 0 FUS4, EMB134, CSN4, COP14, FUS8, COP8, ATS4 FUSCA 8, FUSCA 4, EMBRYO DEFECTIVE 134, COP9 SIGNALOSOME SUBUNIT 4, CONSTITUTIVE PHOTOMORPHOGENIC 8, CONSTITUTIVE PHOTOMORPHOGENIC 14, Proteasome component (PCI) domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010816 [exp] 666 / 0 AT5G42970 654 / 0.0 FUSCA 8, FUSCA 4, EMBRYO DEFECTIVE 134, COP9 SIGNALOSOME SUBUNIT 4, CONSTITUTIVE PHOTOMORPHOGENIC 8, CONSTITUTIVE PHOTOMORPHOGENIC 14, Proteasome component (PCI) domain protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G180800 [exp] 620 / 0 AT5G42970 695 / 0.0 FUSCA 8, FUSCA 4, EMBRYO DEFECTIVE 134, COP9 SIGNALOSOME SUBUNIT 4, CONSTITUTIVE PHOTOMORPHOGENIC 8, CONSTITUTIVE PHOTOMORPHOGENIC 14, Proteasome component (PCI) domain protein (.1) Potri.002G263200 [exp] 618 / 0 AT5G42970 700 / 0.0 FUSCA 8, FUSCA 4, EMBRYO DEFECTIVE 134, COP9 SIGNALOSOME SUBUNIT 4, CONSTITUTIVE PHOTOMORPHOGENIC 8, CONSTITUTIVE PHOTOMORPHOGENIC 14, Proteasome component (PCI) domain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01399 [flax] [poplar] PCI PCI domain
Representative CDS sequence Show only first row Show all	>Lus10007164 pacid=23140474 polypeptide=Lus10007164 locus=Lus10007164.g ID=Lus10007164.BGIv1.0 annot-version=v1.0 ATGGAGAGCGCCTTCGCAACCGCCTCGGCGATCACGGACCAGAGGCAAAAGATCGAACAGTACAAGCACATTCTCTCCTCCGTCATCTCCTCCAACGACA TTGTTCTCGCCAAGAAGTTTATCGGTCACATGCTATCTGACGATGTTCCATTAGTCGTATCGAGGCAGCTCTTGCAGACTTTTGCTCAAGAGCTGGGAAG ACTGCAGCCTGAAGCTCAAAAGGATATTGCTCATTACACTCTTGCTCAGATTCAGCCTCGGGTTGTTTCCTTCGAAGAACAGGTGTTAACTATTAGAGAG AAACTTGCTGAGCTATATGAATCGGAACAGCAGTGGTCAAGAGCAGCACAGATGCTGAGTGGAATTGATTTGGACTCTGGAATGAGGGTCATTGATGATA CCTATAGATTGTCAAAGTGCGTCCAAATTGCTCGACTGTATCTTGAGGATGATGATGCTGTTAATGCTGAGGCATTCATCAACAAAGCTTCATTTTTGGT TAGCAACAGCCAACATGAAGTGTTGAACTTACAATACAAGGATGCATTAGAGCAAGCACTGACTGCTGCTGTAACATGTACAATCTTAGCTGCTGCGGGC CCTCAACGTTCTCGTGTCCTGGCCACTTTATACAAGGATGAGAGATGCTCAAAGCTAAAAATTTATCCTATACTACAAAAGGTATACTTGGAAAGGATTC TAAGGAAACCTGAAATTGATGCATTTTCTGAAGAACTAAAGCCCCATCAGAAAGCTCAGCTCCCAGATAACTTCACTGTCCTTGATCGAGCTATGATCGA GCACAATCTTCTGAGTGCAAGTAAACTATACACAAACATAAGCTTTGACGAGTTAGGCACCTTGCTGGGTATACCTTCACATAAGGTGGAAGCCGTCATA CATTTTGAGGACGACACGGAAGAGCTTCAGCAATGGGATCAACAGATTGTTGGGTTGTGTCAAGCACTAAATGATGTCCTGGATAGCATGGCGAAGAAGG GTTTGGCAATCCCAGTCTAG
AA sequence Show only first row Show all	>Lus10007164 pacid=23140474 polypeptide=Lus10007164 locus=Lus10007164.g ID=Lus10007164.BGIv1.0 annot-version=v1.0 MESAFATASAITDQRQKIEQYKHILSSVISSNDIVLAKKFIGHMLSDDVPLVVSRQLLQTFAQELGRLQPEAQKDIAHYTLAQIQPRVVSFEEQVLTIRE KLAELYESEQQWSRAAQMLSGIDLDSGMRVIDDTYRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSNSQHEVLNLQYKDALEQALTAAVTCTILAAAG PQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFSEELKPHQKAQLPDNFTVLDRAMIEHNLLSASKLYTNISFDELGTLLGIPSHKVEAVI HFEDDTEELQQWDQQIVGLCQALNDVLDSMAKKGLAIPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42970		FUS4, EMB134, C...	FUSCA 8, FUSCA 4, EMBRYO DEFEC...		Lus10007164 [exp]	0	1
AT1G78770		APC6	anaphase promoting complex 6 (...		Lus10012876 [exp]	5.7	0.8407
AT1G78770		APC6	anaphase promoting complex 6 (...		Lus10030525 [exp]	8.4	0.8471
AT2G39990		AteIF3f, EIF2	Arabidopsis thaliana eukaryoti...		Lus10028272 [exp]	12.0	0.8171
AT5G01570			unknown protein		Lus10012505 [exp]	12.1	0.7669
AT4G29000	CPP		Tesmin/TSO1-like CXC domain-co...		Lus10023656 [exp]	16.2	0.8294
AT3G12280		RB1, RBL1, RBR1...	RETINOBLASTOMA 1, RETINOBLASTO...		Lus10026154 [exp]	18.4	0.8171
AT3G02530			TCP-1/cpn60 chaperonin family ...		Lus10033546 [exp]	19.6	0.8155
AT4G24820			26S proteasome, regulatory sub...		Lus10027348 [exp]	19.9	0.8034
AT1G77470		EMB2810, RFC5, ...	replication factor C 5, EMBRYO...		Lus10018144 [exp]	21.2	0.8120
AT5G06680		ATSPC98, SPC98,...	ARABIDOPSIS THALIANA GAMMA TUB...		Lus10016246 [exp]	23.8	0.8191

Compare expression of checked genes

Lus10007164 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.