Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50700 347 / 5e-115 C2H2ZnF ATIDD2 indeterminate(ID)-domain 2 (.1) AT5G66730 345 / 2e-113 C2H2ZnF IDD1, ENY INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) AT1G03840 330 / 2e-107 C2H2ZnF MGP Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) AT5G44160 322 / 6e-105 C2H2ZnF AtIDD8, NUC nutcracker, INDETERMINATE DOMAIN 8, C2H2-like zinc finger protein (.1) AT1G55110 320 / 4e-104 C2H2ZnF ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7, ATIDD7, ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7 indeterminate(ID)-domain 7 (.1) AT3G13810 319 / 4e-103 C2H2ZnF ATIDD11 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) AT1G14580 313 / 1e-101 C2H2ZnF C2H2-like zinc finger protein (.1.2) AT4G02670 311 / 1e-101 C2H2ZnF ATIDD12 indeterminate(ID)-domain 12 (.1) AT3G45260 311 / 8e-101 C2H2ZnF C2H2-like zinc finger protein (.1) AT5G03150 312 / 1e-100 C2H2ZnF JKD JACKDAW, C2H2-like zinc finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010820 [exp] 419 / 3e-145 AT3G50700 349 / 2e-119 indeterminate(ID)-domain 2 (.1) Lus10041723 [exp] 329 / 7e-107 AT3G50700 489 / 1e-170 indeterminate(ID)-domain 2 (.1) Lus10019927 [exp] 319 / 1e-103 AT5G03150 386 / 6e-130 JACKDAW, C2H2-like zinc finger protein (.1) Lus10026497 [exp] 319 / 2e-103 AT5G03150 384 / 2e-129 JACKDAW, C2H2-like zinc finger protein (.1) Lus10004497 [exp] 316 / 3e-102 AT1G55110 341 / 5e-113 indeterminate(ID)-domain 7 (.1) Lus10008396 [exp] 317 / 7e-102 AT3G13810 339 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) Lus10029904 [exp] 312 / 3e-101 AT1G55110 337 / 6e-112 indeterminate(ID)-domain 7 (.1) Lus10041356 [exp] 324 / 2e-100 AT1G03840 332 / 2e-103 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Lus10004840 [exp] 311 / 7e-100 AT3G13810 337 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G180600 [exp] 401 / 4e-135 AT3G50700 368 / 3e-123 indeterminate(ID)-domain 2 (.1) Potri.002G263600 [exp] 400 / 6e-135 AT3G50700 337 / 4e-111 indeterminate(ID)-domain 2 (.1) Potri.007G028800 [exp] 347 / 9e-114 AT5G66730 416 / 1e-140 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Potri.005G125600 [exp] 339 / 8e-111 AT5G66730 429 / 4e-146 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Potri.006G129300 [exp] 336 / 8e-110 AT5G03150 371 / 1e-123 JACKDAW, C2H2-like zinc finger protein (.1) Potri.013G019200 [exp] 335 / 3e-109 AT3G50700 327 / 4e-107 indeterminate(ID)-domain 2 (.1) Potri.017G017100 [exp] 331 / 2e-108 AT1G03840 459 / 1e-158 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.007G135000 [exp] 330 / 6e-108 AT1G03840 435 / 3e-149 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.003G036900 [exp] 331 / 2e-107 AT1G55110 372 / 3e-124 indeterminate(ID)-domain 7 (.1) Potri.005G027200 [exp] 330 / 2e-107 AT1G03840 300 / 7e-96 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007168 pacid=23140466 polypeptide=Lus10007168 locus=Lus10007168.g ID=Lus10007168.BGIv1.0 annot-version=v1.0 ATGGCGGAGGTTGAGAATTCGTCTCAAGTGACGGTTTCTGGAGCAGCTTTATCTGGCGAAGCAAACAGCGTATCTTCCTTCGGAAACCAACCCACAACTA CGACGAAGAAGAAGCGGAATCTCCCCGGAATGCCAGATCCAGAAGCTGAAGTAATCGCGTTATCCCCAGTGTCTTTGCTGGCGACCAACAGATTCGTTTG CGAGATCTGCAGTAAAGGATTTCAGCGAGACCAGAACCTGCAGCTCCACCGACGAGGCCATAACTTGCCGTGGAAGCTAAAGCAGCGGAGCAGCAAGGAG CTGAGGAAGCGGGTCTACGTTTGCCCAGAACCGAGTTGCGTACACCACGACCCGGCCCGAGCTCTGGGGGACCTGACTGGAATCAAGAAACACTTCTGCA GGAAACACGGGGAGAAGAAGTGGAAGTGCGAGCGTTGCACTAAGAAGTACGCCGTTCAGTCCGATTGGAAAGCTCATATGAAGACCTGTGGGACTCGCGA GTATAAATGCGATTGCGGAACTTTGTTCTCAAGGAGGGACAGCTTTATCACGCATCGGGCATTCTGTGACGCTCTGGCGGAGGAGAGCATAAGAAGCAAT AATCCCCCCCTAACAGTAACCAACAACAACAACCCTAGTCCTAGTCCGACGGTGGTTGTTTCCCCTCCGCCGCCTCCTCATACGCCGTCGACCACCGTTA TTTCCCCTGGCAACTCCGTCCAGAGCTCAGAGAATCCGGCAGCTTTGGCTTCTCCACCTGCAACAACCGCGGCTGGAGTAACAAACACAAGCTCCACTTG CACTGCTTCAACCAGTAATGTCTTTGCCAGCATTTTCGCATCCCAGACCACAGCACCATCCACCATTCCACCCTCGGCTGACAATTCGGCTGGAGTAACA AACACAAGCTCCACTTGCACTGCTTCAACCAGTAATGTCTTTGCCAGCATTTTCGCATCCCAGACCACAGCACCATCCACCATTCCACCCTCGGCTGACA ATTCTTCTCCATCAGCTTCTGCCGGTGTTGCTGGTGTTGGCTCTTTCTCAGACCTCCTCCAGTCGTTCACTCCTTCAGACTGCCCACTCACAATTACGAT GATCGAACCTCCGTCCCTTTCGTTATCCCAGCCGCCAATTAATTACCTCTCCACAACAGCTCCCTCTTCAGCATTGTTGGGAATGGGAGGCAGAGGTGGT CAAGAGCACTACGGCCATGCCACCACCATGTCCGCAACTGCATTGCTCCAGAAAGCGGCTCAGATGGGGTCGACCACATCCAACCAGTCCTTCCTAAGAG GGTTGGGACTGCAAATGTCACCCTCCTCTACTACTCATTCCCAAGATACAAATGGGAATCGCCATCCATGGGAAGTGAAGCCAGAGAGTGGTGGGCTTGG ACTTGGTTTGGGGCTATCTTATGGCCCAACAACCCTCGATCTTCTGGGCTTGGGTTTGGGTTCCAGCCCGGCTCTCCTCACCTCTTACGGCCATGGCTTC AACATCGGAAGGAGTTCAGAAGAGACGTGGGATAATAATAATACAGGCGGGGCGGGAAAAGAGCACTGA
AA sequence Show only first row Show all	>Lus10007168 pacid=23140466 polypeptide=Lus10007168 locus=Lus10007168.g ID=Lus10007168.BGIv1.0 annot-version=v1.0 MAEVENSSQVTVSGAALSGEANSVSSFGNQPTTTTKKKRNLPGMPDPEAEVIALSPVSLLATNRFVCEICSKGFQRDQNLQLHRRGHNLPWKLKQRSSKE LRKRVYVCPEPSCVHHDPARALGDLTGIKKHFCRKHGEKKWKCERCTKKYAVQSDWKAHMKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEESIRSN NPPLTVTNNNNPSPSPTVVVSPPPPPHTPSTTVISPGNSVQSSENPAALASPPATTAAGVTNTSSTCTASTSNVFASIFASQTTAPSTIPPSADNSAGVT NTSSTCTASTSNVFASIFASQTTAPSTIPPSADNSSPSASAGVAGVGSFSDLLQSFTPSDCPLTITMIEPPSLSLSQPPINYLSTTAPSSALLGMGGRGG QEHYGHATTMSATALLQKAAQMGSTTSNQSFLRGLGLQMSPSSTTHSQDTNGNRHPWEVKPESGGLGLGLGLSYGPTTLDLLGLGLGSSPALLTSYGHGF NIGRSSEETWDNNNTGGAGKEH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66730	C2H2ZnF	IDD1, ENY	INDETERMINATE DOMAIN 1, ENHYDR...		Lus10007168 [exp]	0	1
AT5G66320	GATA	GATA5	GATA transcription factor 5 (....		Lus10028360 [exp]	4.4	0.8066
AT3G11590			unknown protein		Lus10017001 [exp]	7.5	0.7907
AT2G22370			unknown protein		Lus10023150 [exp]	10.0	0.7785
AT3G15630			unknown protein		Lus10017768 [exp]	10.5	0.7524
AT4G39100		SHL1	short life, PHD finger family ...		Lus10017482 [exp]	14.3	0.7691
AT2G27810		ATNAT12	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Lus10009401 [exp]	17.3	0.7842
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Lus10026614 [exp]	19.4	0.7411
AT5G58530			Glutaredoxin family protein (....		Lus10007517 [exp]	21.0	0.7467
AT1G30790			F-box and associated interacti...		Lus10041462 [exp]	23.5	0.6403
AT1G13170		ORP1D	OSBP(oxysterol binding protein...		Lus10006237 [exp]	24.5	0.7527

Compare expression of checked genes

Lus10007168 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.