Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16250 206 / 2e-61 Leucine-rich repeat protein kinase family protein (.1) AT4G39270 171 / 6e-49 Leucine-rich repeat protein kinase family protein (.1.2) AT2G33170 102 / 6e-25 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G17230 99 / 8e-24 Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 96 / 8e-23 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT5G63930 95 / 2e-22 Leucine-rich repeat protein kinase family protein (.1) AT5G07280 95 / 2e-22 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G78530 93 / 2e-22 Protein kinase superfamily protein (.1) AT4G28490 93 / 8e-22 RLK5, HAESA RECEPTOR-LIKE PROTEIN KINASE 5, HAESA, Leucine-rich receptor-like protein kinase family protein (.1) AT3G49670 92 / 1e-21 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010823 [exp] 326 / 1e-106 AT2G16250 717 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023570 [exp] 222 / 3e-67 AT2G16250 920 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10040455 [exp] 221 / 5e-67 AT2G16250 914 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10003503 [exp] 102 / 2e-26 AT1G72180 278 / 2e-87 Leucine-rich receptor-like protein kinase family protein (.1) Lus10039872 [exp] 100 / 3e-24 AT1G28440 942 / 0.0 HAESA-like 1 (.1) Lus10009476 [exp] 100 / 5e-24 AT1G72180 995 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10018636 [exp] 100 / 6e-24 AT1G28440 1203 / 0.0 HAESA-like 1 (.1) Lus10006028 [exp] 97 / 5e-23 AT5G25930 1116 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10005491 [exp] 96 / 9e-23 AT5G25930 1104 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G196600 [exp] 236 / 9e-73 AT2G16250 741 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.009G116300 [exp] 236 / 2e-72 AT2G16250 886 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.002G260100 [exp] 230 / 2e-70 AT2G16250 711 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G155100 [exp] 228 / 1e-69 AT2G16250 921 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G016600 [exp] 100 / 4e-24 AT1G28440 1130 / 0.0 HAESA-like 1 (.1) Potri.018G057100 [exp] 100 / 5e-24 AT5G25930 1034 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.007G135400 [exp] 99 / 6e-24 AT1G28440 1109 / 0.0 HAESA-like 1 (.1) Potri.013G048800 [exp] 99 / 8e-24 AT1G08590 1306 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.019G021700 [exp] 99 / 9e-24 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.004G049100 [exp] 99 / 1e-23 AT1G28440 1387 / 0.0 HAESA-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10007171 pacid=23140458 polypeptide=Lus10007171 locus=Lus10007171.g ID=Lus10007171.BGIv1.0 annot-version=v1.0 ATGCCAAATGGGGACTTGGCTAGTTCGCTACACAGGGTAGTAAGCAATGCTGAAGAAGGTAGTTTACAGTCGTTGGATTGGATTACAAGGTTGATAATAG CTATAGGAGCTGCTGAAGCCCTTTGTTTCCTGCATCATGAGTGTATTCCTCCTGTTGTTCATAGGGATGTGCAAGCTAGCTGTATCCTTCTTGATGACAA GTTCGAGGTTCGACTTGGAAGCTTAAGTGAGATTCGGGTCCAGGAAGGCGAATCGCACCACAGCAAGATCATCACAAGATTCTTGCGAAAGCAACTATCA TCTGAATCCGGCTCCTCTGGACGTAAGTTAACCCACTTTGGTTACGACGACACAGGCGCATTAATGGCAACTTGTGCGTACGATGTTTACTGCTTCGGCA AGGTCTTGCTTGAGCTGGTAACAGGCAAGCTTGGAGTCAGCAGCAAGTCTGAAAATGCCGCAATGCGTGATTGGTTGGATCGTACACTTGGATACGTCAG TATCTACAACAAGGATATGGTGACCAAGATTGTAGACCCTTTACTGATTGTTGATGAAGACTTGTTACAGACTTGTTACAAGAGGTATGGGCAATGGCGA TTGTGGCAAGGTCATGTCTTAATCCGAAGCCTTCCAAACGTCCTCCTATGA
AA sequence Show only first row Show all	>Lus10007171 pacid=23140458 polypeptide=Lus10007171 locus=Lus10007171.g ID=Lus10007171.BGIv1.0 annot-version=v1.0 MPNGDLASSLHRVVSNAEEGSLQSLDWITRLIIAIGAAEALCFLHHECIPPVVHRDVQASCILLDDKFEVRLGSLSEIRVQEGESHHSKIITRFLRKQLS SESGSSGRKLTHFGYDDTGALMATCAYDVYCFGKVLLELVTGKLGVSSKSENAAMRDWLDRTLGYVSIYNKDMVTKIVDPLLIVDEDLLQTCYKRYGQWR LWQGHVLIRSLPNVLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16250			Leucine-rich repeat protein ki...		Lus10007171 [exp]	0	1
AT5G35400			Pseudouridine synthase family ...		Lus10022949 [exp]	18.1	0.7136
AT5G36230			ARM repeat superfamily protein...		Lus10018182 [exp]	30.6	0.7046
AT3G24200			FAD/NAD(P)-binding oxidoreduct...		Lus10011742 [exp]	37.9	0.6892
AT5G24650			Mitochondrial import inner mem...		Lus10032913 [exp]	41.8	0.6829
AT4G14050			Pentatricopeptide repeat (PPR)...		Lus10040634 [exp]	42.2	0.6901
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10015541 [exp]	48.4	0.6728
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Lus10039741 [exp]	54.3	0.5957
AT3G12940			2-oxoglutarate (2OG) and Fe(II...		Lus10027382 [exp]	55.4	0.6769
AT3G15130			Tetratricopeptide repeat (TPR)...		Lus10030124 [exp]	62.5	0.6651
AT4G39530			Tetratricopeptide repeat (TPR)...		Lus10014452 [exp]	65.1	0.6342

Compare expression of checked genes

Lus10007171 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.