Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12810 115 / 8e-29 CHR13, SRCAP, PIE1 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002973 [exp] 484 / 6e-174 AT3G12810 118 / 6e-29 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G207700 [exp] 169 / 2e-47 AT3G12810 2199 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.003G022100 [exp] 164 / 1e-45 AT3G12810 1824 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007172 pacid=23162079 polypeptide=Lus10007172 locus=Lus10007172.g ID=Lus10007172.BGIv1.0 annot-version=v1.0 ATGCTTTTAAATGTTGCTGGCCAGCAGCCAGATCATGAATTGCTTCTTCAGAGGCATTTCACTGCCCTCCTTTCTTCAGTCTGGAAAGCAGCGTGCCACA ATAGCAGTTATTTTGGTGAAAAATCTATAAATTGTGTTAGTCAGACATCTCAGCTTTCTGTGAATGGATTTTACAGAAGATTGTGGTCGACTAATATAAG GCACTCTGGTAAGTTAGTGGCCGCTGCACTACGAGATGTCAGTAGCAGAAGGACAGATGATGGGGTATCGGTTTCCATTGCAAAGGAAGGAGTTCCTGCT ACTGACAGGCTGGAAGTAACTCTGGAATTCCAGGGGGGGAACAATACTGAGTTGGTATTCCCACCCTTGGTGAGTTTGTCCATTCTAGGGGGGTCAGATA GACAGACATGTATGATGAAAGAGGCAGGAGAAGTTCATCTCAGAAGTAGCACAGTTTTGGCTGAGACACGCTATCGGGATGGTTGGAAAGCTGGGACTGC AGATATTCCTGTTTCAGCAAATGACACCAAGTTACGACCAGCTCTTAAATTGCACCCTTCTGGAAAGCAAAAATTCAGCGCTTTGGACACTGTAAGGGTT CCCAGGTCAAAGCTAAAGAAAGCATCATCAGAGCAGAGTGAGACGATGAACAATCCTTTTGCCGATGCTGTCTTAAAGACCACGTCGGGAGCTTGGAATG CTGCTGATTCTGATTTTGAAAATGAACCTGTTAGTTCCATAGGCAGAGATGTTTTACTGGAAAGTGAAAGTTTCGAGTCTGTCTTACCTCATGTATATGT TGCTGGTTTGATATCGGACCTGGATGATTGGCCCCTGTTTACTGACACTGGGTAG
AA sequence Show only first row Show all	>Lus10007172 pacid=23162079 polypeptide=Lus10007172 locus=Lus10007172.g ID=Lus10007172.BGIv1.0 annot-version=v1.0 MLLNVAGQQPDHELLLQRHFTALLSSVWKAACHNSSYFGEKSINCVSQTSQLSVNGFYRRLWSTNIRHSGKLVAAALRDVSSRRTDDGVSVSIAKEGVPA TDRLEVTLEFQGGNNTELVFPPLVSLSILGGSDRQTCMMKEAGEVHLRSSTVLAETRYRDGWKAGTADIPVSANDTKLRPALKLHPSGKQKFSALDTVRV PRSKLKKASSEQSETMNNPFADAVLKTTSGAWNAADSDFENEPVSSIGRDVLLESESFESVLPHVYVAGLISDLDDWPLFTDTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Lus10007172 [exp]	0	1
AT5G23520			smr (Small MutS Related) domai...		Lus10019219 [exp]	7.3	0.7623
AT1G19485			Transducin/WD40 repeat-like su...		Lus10018573 [exp]	9.6	0.7551
AT4G32551		RON2, LUG	ROTUNDA 2, LEUNIG, LisH dimeri...		Lus10017754 [exp]	12.4	0.7625
AT4G32520		AtSHMT3, SHM3	serine hydroxymethyltransferas...		Lus10022391 [exp]	17.4	0.7072
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10040963 [exp]	21.8	0.7048
AT2G16370		THY-1	thymidylate synthase 1 (.1)		Lus10023549 [exp]	22.3	0.7116
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Lus10009475 [exp]	30.7	0.7172
AT2G21470		EMB2764, ATSAE2...	EMBRYO DEFECTIVE 2764, SUMO-ac...		Lus10017479 [exp]	32.3	0.6904
AT3G07610		IBM1	increase in bonsai methylation...		Lus10002051 [exp]	32.7	0.7023
AT5G62760			P-loop containing nucleoside t...		Lus10004265 [exp]	39.2	0.6899

Compare expression of checked genes

Lus10007172 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.