Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12810 348 / 1e-104 CHR13, SRCAP, PIE1 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) AT5G66750 113 / 5e-26 CHR01, CHA1, SOM1, CHR1, SOM4, DDM1, ATDDM1 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) AT3G06400 113 / 1e-25 CHR11 chromatin-remodeling protein 11 (.1.2.3) AT3G57300 113 / 1e-25 ATINO80 INO80 ortholog (.1.2) AT3G06010 111 / 3e-25 ATCHR12 Homeotic gene regulator (.1) AT5G19310 111 / 3e-25 Homeotic gene regulator (.1) AT5G18620 109 / 1e-24 CHR17 chromatin remodeling factor17 (.1.2) AT2G02090 108 / 2e-24 CHA19, ETL1, CHR19 CHROMATIN REMODELING 19, SNF2 domain-containing protein / helicase domain-containing protein (.1) AT2G13370 103 / 1e-22 CHR5 chromatin remodeling 5 (.1) AT2G25170 99 / 3e-21 CKH2, SSL2, GYM, CHD3, PKL, CHR6 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002974 [exp] 933 / 0 AT3G12810 1071 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10035436 [exp] 114 / 6e-26 AT3G57300 1875 / 0.0 INO80 ortholog (.1.2) Lus10031050 [exp] 114 / 7e-26 AT3G57300 2115 / 0.0 INO80 ortholog (.1.2) Lus10033967 [exp] 113 / 2e-25 AT5G18620 1650 / 0.0 chromatin remodeling factor17 (.1.2) Lus10034064 [exp] 112 / 2e-25 AT3G06010 1422 / 0.0 Homeotic gene regulator (.1) Lus10012813 [exp] 112 / 2e-25 AT5G18620 952 / 0.0 chromatin remodeling factor17 (.1.2) Lus10010522 [exp] 111 / 5e-25 AT3G06010 1358 / 0.0 Homeotic gene regulator (.1) Lus10041735 [exp] 106 / 1e-23 AT5G66750 1069 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Lus10024019 [exp] 106 / 1e-23 AT5G66750 1034 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G207700 [exp] 639 / 0 AT3G12810 2199 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.003G022100 [exp] 404 / 3e-124 AT3G12810 1824 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.006G047100 [exp] 114 / 3e-26 AT3G57300 2135 / 0.0 INO80 ortholog (.1.2) Potri.016G043500 [exp] 114 / 4e-26 AT3G57300 2157 / 0.0 INO80 ortholog (.1.2) Potri.008G149900 [exp] 113 / 1e-25 AT3G06010 1485 / 0.0 Homeotic gene regulator (.1) Potri.010G021400 [exp] 113 / 1e-25 AT3G06400 1748 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.010G091200 [exp] 113 / 1e-25 AT3G06010 1408 / 0.0 Homeotic gene regulator (.1) Potri.008G205600 [exp] 112 / 1e-25 AT3G06400 1724 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.007G026700 [exp] 112 / 1e-25 AT5G66750 993 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.019G129900 [exp] 110 / 7e-25 AT5G66750 1047 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10007173 pacid=23162068 polypeptide=Lus10007173 locus=Lus10007173.g ID=Lus10007173.BGIv1.0 annot-version=v1.0 ATGTTGTCAACCCGTAGCGGTGGTGTTGGAATAAATCTTGTTGGTGCTGATACAGTCATCTTCTACGACAGTGACTGGAATCCTGCTATGGACCAACAGG CTCAAGATCGCTGCCATAGAATAGGACAAACGCGGGAAGTGAATATTTACAGGTTAATTAGTGAAAGCACCATTGAGGAAAATATTTTAAAGAAGGCTAA TCAGAAGCGTGCTCTCGATGATCTGGTTATCCAGAGTGGTGGATACAGCACTGAATTTTTCAAGAAGCTTGATCCAATGGAGTTGTTCTCTGGTCATAAA ACCCTTCCAGTAAAAATCACGCAGAATGAAAAGAACAATAGTGACGAAAATGTGGTTCCCTTGTCTAATGCAGATGTTGAAGCTGCCATTAAATATGCCG AAGATGAAGCAGATTACATGGCACTGAAAATGGTCGAGCAGGAAGAGGAGGTGCACAACCAGGAGTTCACTGAGGAAGCAATTGGGAGACTCGAGGATGA TGATTGTTTGGAGGAGGATGATGTGAAGGTTGATGAGCAAGGGGAGCAAGAGAATTCACCATCAGAGGGAGACTATAGGGGCAATTTAAATGACAGTAAT AGCGTTGAAGAGAAAGCTCTCATTAAAGCTGCCAATGAAGATGATGCTGACATGCTTGCTGATGTTAGACAGATGGCTGAAGCAGCAGCAGCTGCTGCTG GACAAGCTATTTCATCATTTGAAACTCACTTGCGCCCAATTGACAGATATGCCATTCGGTTCTTAGAATTTTGGGATCCAATAGTAGACAAAGCAGCCAT AGATACTCAAGATCGCCTTGAGGAGAGGGAATGGGAACTTGATCGTATTGAGAAGTACAAGGAGGAACTGGAAGCTGAGATTGACGATGATGAAGAACCA CTTGTATACGAAAGTTGGGATGCTGATTTTGCAACTGAAGCATATCGCCATCAAGTTCAGGTGTTAGCTCAGCAGCAGTTGATGGAGGAATTGGAAGCCG AAGCTAAACAGAAGCAAGATATAATTGATGAAGAATGTGAAACTACCATGGAAGGAATGCAAACAAATTCAAAACCAAAGTCAAAAAAGAAAGTCAAAAA GACAAAATTCAAATCCTTGAAGAAGGGTTCTTTGTCTTCCGAGTTGCAACATGTGAAAAAGGAACCATCAATCGAAACTTTTTCCTCAGATGATGATTTG ATTGATGAGGACGAGTTAACTAATCCAGGTATGGTGTCATCTTGTTCAAGTGCACAGAAAAAGCGCAAGAAAGCTGAAACAGTAATTCACGTTGGGAAGA GCTCAAGTAAGAAGTCGAAGAGACTAAAGAAGGCCCCTGAAGTATCCCCGTCAGGACTGAATACCAAACAGTCTGGAAAGAAGTACGATGATTCCATGGA GCTGAAATATTGTGAAAACAAAGTTACTGATCTGGACCCAAAGCTGGCTAGTATGAGCAAAATGGGAGGAAAGGTTTCCATAACAACCATGCCAGTGAAG CGCATCTTAATGATAAAGCCGGAGAAAATAAAAAGAGGCAATGTATGGTCAAGAGATTGTGTTCCCTCACCTGATTCTTGGCTGCCACAGGAGGATGCAA TATTGTGTGCTGTTGTACAAGAATATGGACTAAATTGGAGTTTGGTCAGCGACGCATTGTATGGTATGACTGCTGGTGGGTTTTACCGCGGTAGATATCG TCATCCAGTTCATTGTTGCGAGAGATACCGGGAATTAATCCAAAAGCATATTCTATCGGCACCCGAGAATCCTGTTAGTGAAAGGATGAACAATGTGGGT TCGGGGAAGGGCCTGCTCAAAATAACAGAGGTATGTTCTGATTTCCTGTGGTAA
AA sequence Show only first row Show all	>Lus10007173 pacid=23162068 polypeptide=Lus10007173 locus=Lus10007173.g ID=Lus10007173.BGIv1.0 annot-version=v1.0 MLSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVNIYRLISESTIEENILKKANQKRALDDLVIQSGGYSTEFFKKLDPMELFSGHK TLPVKITQNEKNNSDENVVPLSNADVEAAIKYAEDEADYMALKMVEQEEEVHNQEFTEEAIGRLEDDDCLEEDDVKVDEQGEQENSPSEGDYRGNLNDSN SVEEKALIKAANEDDADMLADVRQMAEAAAAAAGQAISSFETHLRPIDRYAIRFLEFWDPIVDKAAIDTQDRLEEREWELDRIEKYKEELEAEIDDDEEP LVYESWDADFATEAYRHQVQVLAQQQLMEELEAEAKQKQDIIDEECETTMEGMQTNSKPKSKKKVKKTKFKSLKKGSLSSELQHVKKEPSIETFSSDDDL IDEDELTNPGMVSSCSSAQKKRKKAETVIHVGKSSSKKSKRLKKAPEVSPSGLNTKQSGKKYDDSMELKYCENKVTDLDPKLASMSKMGGKVSITTMPVK RILMIKPEKIKRGNVWSRDCVPSPDSWLPQEDAILCAVVQEYGLNWSLVSDALYGMTAGGFYRGRYRHPVHCCERYRELIQKHILSAPENPVSERMNNVG SGKGLLKITEVCSDFLW

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Lus10007173 [exp]	0	1
AT5G65560			Pentatricopeptide repeat (PPR)...		Lus10026558 [exp]	5.1	0.9222
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Lus10002974 [exp]	5.4	0.9513
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Lus10007174 [exp]	8.1	0.9442
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Lus10040980 [exp]	10.1	0.9325
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10010729 [exp]	11.2	0.9328
AT4G34430		ATSWI3D, CHB3	SWITCH/SUCROSE NONFERMENTING 3...		Lus10040472 [exp]	12.6	0.9242
AT5G09470		DIC3	dicarboxylate carrier 3 (.1)		Lus10024540 [exp]	14.1	0.9392
AT5G02310		PRT6, CER3	proteolysis 6 (.1)		Lus10025352 [exp]	15.9	0.9362
AT5G04560		DME1, DME	DEMETER, HhH-GPD base excision...		Lus10023864 [exp]	17.2	0.9247
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10029217 [exp]	19.0	0.9041

Compare expression of checked genes

Lus10007173 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.