Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12810 271 / 7e-82 CHR13, SRCAP, PIE1 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) AT3G24880 57 / 1e-08 Helicase/SANT-associated, DNA binding protein (.1) AT3G24870 57 / 2e-08 Helicase/SANT-associated, DNA binding protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002974 [exp] 452 / 9e-147 AT3G12810 1071 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10011850 [exp] 63 / 1e-10 AT3G24870 1216 / 0.0 Helicase/SANT-associated, DNA binding protein (.1.2) Lus10022788 [exp] 62 / 3e-10 AT3G24870 1202 / 0.0 Helicase/SANT-associated, DNA binding protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G207700 [exp] 337 / 8e-105 AT3G12810 2199 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.003G022100 [exp] 332 / 7e-103 AT3G12810 1824 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.014G189900 [exp] 60 / 1e-09 AT3G24870 1237 / 0.0 Helicase/SANT-associated, DNA binding protein (.1.2) Potri.002G243400 [exp] 55 / 5e-08 AT3G24870 1017 / 0.0 Helicase/SANT-associated, DNA binding protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF07529 [flax] [poplar] HSA HSA
Representative CDS sequence Show only first row Show all	>Lus10007174 pacid=23162073 polypeptide=Lus10007174 locus=Lus10007174.g ID=Lus10007174.BGIv1.0 annot-version=v1.0 ATGGCGTCCAAAGGCCCGAGGTCCAAGCTTGATAATGAAACCAGAGCTCGCCGCCAAAAGGCGTTTGAAGCTCCTAGGGAACCTCCCCGCCCAAAAGTTC ATTGGGACCATGTTTTGGAAGAGATGATTTGGCTTTCAAAGGACTTTGAGTCGGAGCGGAAATGGAAATTAAGTCAGGCAAAAAAAGTTGCTTTAAGAGC CAGCAAGGGTATGGTGGATCAGGCTACCCGCGGAGAAAAGAAATTGAAGGAGGAGGAGCAACGGATGCGAAAAGTTGCACTTAATATTTCGAAGGATGTC AAGAAGTTCTGGATCAAAATCGAGAAGCTGGCAAGTTTGGTACTTTATAAGCATCAGATGGAAGTTGATGAGAAAAAGAAAAAGGCCCTCGATAAGCAGC TTGAGTTTCTTTTGGGACAGACTGAGAGGTACTCAACAATGTTAGCAGAAAATCTGGTGGAAAGACCATCACAGTTGATGCTGGATCAATATAGTGCTCC ATCCGCGATAGAGGAGAAGGTTACCCCAACTCCTCAGGATCTTAACAATGAGCCTCAACTGGATGCTGTTGAAGATGGTGACGATGATTATGACATACAT TCTGAGGACAGTTCAGAAGATGATGAGCATACTATTGAAGAAGATGAGGCTCTGTTTACAGAAGAAGAGCGGCAAGAAGAATTGGCTGCTTTGAAAAATG AGGTTGATCTTCCAGTTGAGGGGCTACTCAAGTGTTATACTTCTGATAGAGATGGTAGAGAAAGCAATGCTGCCGAGGAAACATCTGGTAGCATATCTAC TGTGAAAGGGAAAGATGAGGGTGAGCGTAGCTGGATGTTGGAGGCTGATGGTGTAGAATCCGGGTTAGCCAATAATCCTTTAGAGATTGAGACTCGTGAT AGCAGAAACGGTTCGAGTATGCATTGTGATCAGGGAGAGGAGGATTTAGCATGTGATTTCAATGATGAACAGGTATCCATAGTTACCTCTGCTTTTACAG ACAGTGTTATATTCACTTGA
AA sequence Show only first row Show all	>Lus10007174 pacid=23162073 polypeptide=Lus10007174 locus=Lus10007174.g ID=Lus10007174.BGIv1.0 annot-version=v1.0 MASKGPRSKLDNETRARRQKAFEAPREPPRPKVHWDHVLEEMIWLSKDFESERKWKLSQAKKVALRASKGMVDQATRGEKKLKEEEQRMRKVALNISKDV KKFWIKIEKLASLVLYKHQMEVDEKKKKALDKQLEFLLGQTERYSTMLAENLVERPSQLMLDQYSAPSAIEEKVTPTPQDLNNEPQLDAVEDGDDDYDIH SEDSSEDDEHTIEEDEALFTEEERQEELAALKNEVDLPVEGLLKCYTSDRDGRESNAAEETSGSISTVKGKDEGERSWMLEADGVESGLANNPLEIETRD SRNGSSMHCDQGEEDLACDFNDEQVSIVTSAFTDSVIFT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Lus10007174 [exp]	0	1
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Lus10010314 [exp]	2.4	0.9661
AT1G02080			transcription regulators (.1.2...		Lus10042877 [exp]	2.4	0.9793
AT3G54460			SNF2 domain-containing protein...		Lus10024159 [exp]	3.2	0.9667
AT5G24740			Protein of unknown function (D...		Lus10003835 [exp]	5.1	0.9730
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Lus10035106 [exp]	6.5	0.9670
AT5G09470		DIC3	dicarboxylate carrier 3 (.1)		Lus10024540 [exp]	6.6	0.9670
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Lus10014157 [exp]	7.0	0.9602
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Lus10007173 [exp]	8.1	0.9442
AT4G03090			sequence-specific DNA binding;...		Lus10006938 [exp]	8.7	0.9533
AT2G17930			Phosphatidylinositol 3- and 4-...		Lus10041910 [exp]	9.5	0.9590

Compare expression of checked genes

Lus10007174 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.