Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27260 67 / 2e-12 unknown protein AT1G30140 53 / 5e-08 unknown protein AT4G02210 49 / 4e-06 unknown protein AT2G24960 47 / 1e-05 unknown protein AT2G29880 46 / 2e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006030 [exp] 325 / 2e-109 AT4G17260 124 / 9e-32 Lactate/malate dehydrogenase family protein (.1) Lus10007133 [exp] 216 / 4e-69 AT5G27260 46 / 8e-06 unknown protein Lus10004902 [exp] 207 / 2e-67 ND 36 / 0.002 Lus10037335 [exp] 136 / 3e-37 AT5G27260 69 / 7e-13 unknown protein Lus10035759 [exp] 133 / 5e-36 AT5G27260 74 / 6e-15 unknown protein Lus10032348 [exp] 131 / 2e-35 AT5G27260 52 / 2e-07 unknown protein Lus10010798 [exp] 130 / 5e-34 AT5G27260 61 / 5e-10 unknown protein Lus10025132 [exp] 123 / 2e-33 AT5G28950 55 / 1e-09 unknown protein Lus10035428 [exp] 114 / 1e-30 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G163248 [exp] 53 / 1e-07 AT4G02550 93 / 4e-22 unknown protein Potri.010G215600 [exp] 52 / 2e-07 AT4G02550 77 / 7e-16 unknown protein Potri.002G206500 [exp] 49 / 1e-06 AT4G02550 88 / 4e-20 unknown protein Potri.003G047151 [exp] 49 / 1e-06 AT4G02550 69 / 3e-13 unknown protein Potri.009G022650 [exp] 49 / 2e-06 AT4G02550 79 / 7e-17 unknown protein Potri.006G196716 [exp] 49 / 2e-06 AT4G02550 69 / 2e-13 unknown protein Potri.001G157750 [exp] 48 / 3e-06 AT4G02550 73 / 6e-15 unknown protein Potri.011G088750 [exp] 47 / 7e-06 AT4G02550 79 / 3e-17 unknown protein Potri.015G008050 [exp] 47 / 9e-06 AT4G02550 77 / 2e-16 unknown protein Potri.012G061366 [exp] 47 / 1e-05 AT4G02550 71 / 2e-14 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007175 pacid=23162077 polypeptide=Lus10007175 locus=Lus10007175.g ID=Lus10007175.BGIv1.0 annot-version=v1.0 ATGGCTCATAGAAAGGACAAAGAAGATATCGACAGGGGATATTTCGCATGGAACAGCACACTCGAAAACTCTTTGATTGAATGTATGGTGGAGTTGGTTG CTAAAAACCATATTGAGAATGGTGTTTTTAAAGGAGGGGCGTACAAAGAACGGGAGAAAATGGAGTTGAAGGTCCCTGGCTGTGGAATTATGGCTTATCC ACATATCAAATCAAGGTTGAAGGTATTGAAAACTAAACATCAAGCTTACCAACTATGTAGAGGTCAAAGTGGATGGGGATGGGATGATGCGGCGAAGTGT CCAGTCGTCGACAATGATATTTTCAACAACTTTGCGATGATTAACCCCAATTTTCGGGGTCTAAATGGCAAGCCCTTTCCGCAGTATGAGTCATTATTGA TAGTCTTCGGAAATGGCAAAGGGCATGCAACTGGACAAGGAGCTGTAGGAGCTAATGAGAATGCCCCTCCCATAACAGAAAGTGGATTCAACAATGTTAA TGAGGTGGATTTTAGTTTGCTGAATGAAGAGGAAATGGGTAGGTACATGCATAATGTGATTACTGAGGTTGTTAACATGCCAACATCAAATGGGGTTCGG AATGAACAACCAGAAATCTCTGCTACGGGTGATAATTCAGGGAATGGTCGTGCAAGAAGGCCTACGGCTAGACGTATTCTGCTAGAGAGTTCAATTACTG ATTTAACTAGTGAGATTTCAGAGATTAGGCCAGCTATTGATAGAGCTATTGATGTTATGGTCAATAGGATGCTTGGGGAAGATGAGAACCGCAACAATAT GCGACATCAAATCATGATCGACTTGGAAAGTTTGCCTGGGCTCACCCGCCACCAAGTCATTGATGCTATTTCTGCTCTCAATCGAGATGAGAACCATCGC GATTTGCAATTATTCTACAGGCTGAGTACTACCGATGACAAGCTGTACTTCATCAAGAAGATGTTAAGGAGGGAGGAAATATGA
AA sequence Show only first row Show all	>Lus10007175 pacid=23162077 polypeptide=Lus10007175 locus=Lus10007175.g ID=Lus10007175.BGIv1.0 annot-version=v1.0 MAHRKDKEDIDRGYFAWNSTLENSLIECMVELVAKNHIENGVFKGGAYKEREKMELKVPGCGIMAYPHIKSRLKVLKTKHQAYQLCRGQSGWGWDDAAKC PVVDNDIFNNFAMINPNFRGLNGKPFPQYESLLIVFGNGKGHATGQGAVGANENAPPITESGFNNVNEVDFSLLNEEEMGRYMHNVITEVVNMPTSNGVR NEQPEISATGDNSGNGRARRPTARRILLESSITDLTSEISEIRPAIDRAIDVMVNRMLGEDENRNNMRHQIMIDLESLPGLTRHQVIDAISALNRDENHR DLQLFYRLSTTDDKLYFIKKMLRREEI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27260			unknown protein		Lus10007175 [exp]	0	1
					Lus10000529 [exp]	1.7	1.0000
					Lus10005514 [exp]	3.5	1.0000
AT5G05070			DHHC-type zinc finger family p...		Lus10027274 [exp]	3.5	1.0000
AT2G04865			Aminotransferase-like, plant m...		Lus10014633 [exp]	3.9	1.0000
AT1G28300	B3	LEC2	LEAFY COTYLEDON 2, AP2/B3-like...		Lus10014005 [exp]	4.0	1.0000
AT3G02960			Heavy metal transport/detoxifi...		Lus10015762 [exp]	4.9	1.0000
AT1G48120			hydrolases;protein serine/thre...		Lus10008255 [exp]	5.0	0.8923
					Lus10008001 [exp]	5.3	1.0000
AT3G60730			Plant invertase/pectin methyle...		Lus10015877 [exp]	6.3	1.0000
AT2G30710			Ypt/Rab-GAP domain of gyp1p su...		Lus10025585 [exp]	6.6	0.9739

Compare expression of checked genes

Lus10007175 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.