Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030215 [exp] 39 / 0.0008 AT1G78880 195 / 3e-57 Ubiquitin-specific protease family C19-related protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007178 pacid=23162070 polypeptide=Lus10007178 locus=Lus10007178.g ID=Lus10007178.BGIv1.0 annot-version=v1.0 ATGGAGGAAGAACGCGCTGTGTTCCTAAAAGACACGAGCGTGTTCTCTAAAACTCGCTTCTCGGTCCAAAAGTTCCAGAGAAAAGGACACAGCCGGATCC TTGAGGAACACTACGTATCCTTGAGGAACACGCCATGTTCCAAAGGATACGTCGTGTTCTCTAGGGACACGGCAGTGTTCCATGAAATTAACGTCTCGAT TGTATCTTCCAATGAAAATGACACGGGAAGCTGTAACTGCGGCGGAGGAAGAGTAATCACACTCGTCTGGCTTGGCCATCCCGGCGAGCCACCACCAGGG GAGGTCAACGGAGGAGGAGTCAACGAACCATTATCAAATTCATTCCCCGAAAAAGATGTCGTAGTCGTCTGTCTCGGAGAAAGACCGTCTTCCTTGGATC CCTCTGCCGTGCGTTTCCCCCGGGTGAACAAACGCGCACTCCGTCCAATCGTTTGA
AA sequence Show only first row Show all	>Lus10007178 pacid=23162070 polypeptide=Lus10007178 locus=Lus10007178.g ID=Lus10007178.BGIv1.0 annot-version=v1.0 MEEERAVFLKDTSVFSKTRFSVQKFQRKGHSRILEEHYVSLRNTPCSKGYVVFSRDTAVFHEINVSIVSSNENDTGSCNCGGGRVITLVWLGHPGEPPPG EVNGGGVNEPLSNSFPEKDVVVVCLGERPSSLDPSAVRFPRVNKRALRPIV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10007178 [exp]	0	1
AT2G17020			F-box/RNI-like superfamily pro...		Lus10012518 [exp]	2.2	0.8550
					Lus10043038 [exp]	9.3	0.7943
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10012517 [exp]	14.7	0.7646
AT4G22360			SWIB complex BAF60b domain-con...		Lus10014892 [exp]	15.5	0.7521
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Lus10041963 [exp]	16.4	0.7805
AT5G13570		TDT, DCP2, ATDC...	TRIDENT, decapping 2 (.1.2)		Lus10040400 [exp]	16.6	0.7607
AT3G13670			Protein kinase family protein ...		Lus10039203 [exp]	16.7	0.7569
AT2G17020			F-box/RNI-like superfamily pro...		Lus10025094 [exp]	18.2	0.7705
AT1G68552		CPuORF53	conserved peptide upstream ope...		Lus10034317 [exp]	21.0	0.7564
AT1G42430			unknown protein		Lus10021819 [exp]	21.4	0.7354

Compare expression of checked genes

Lus10007178 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.