Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11400 150 / 2e-45 PYM partner of Y14-MAGO (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002977 [exp] 214 / 6e-70 AT1G11400 122 / 2e-34 partner of Y14-MAGO (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G021500 [exp] 189 / 8e-61 AT1G11400 153 / 1e-46 partner of Y14-MAGO (.1.2.3) Potri.001G209100 [exp] 185 / 1e-58 AT1G11400 181 / 4e-57 partner of Y14-MAGO (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09282 [flax] [poplar] Mago-bind Mago binding
Representative CDS sequence Show only first row Show all	>Lus10007180 pacid=23162080 polypeptide=Lus10007180 locus=Lus10007180.g ID=Lus10007180.BGIv1.0 annot-version=v1.0 ATGAACGAGTTGAGCAAAACCCTAAAAGAAGGCGAAAGGATTCTGGCGCCGACCCGGAGACCCGACGGTACTCTTCGAAAATCCATTCGAATTCGTGCAG GTTATGTGCCGCAAGATGAAGTCGCCGTCTACCAGCCCAAAGGTGCCTTGTTGAAGAAGGAGATGGAATCACAGGTTTTTGTACCTCCGGGTTATGATCC AGCTCTAGATACAAAACCGAAGTCAAAGTCAGCCAAGAGGAATGAAAGGAAGAAGGAAAAGCGCCTTCAGGCTGCTATTGAGAAAGGCAATAACTCTGAA GATGTGGATGTGGACTCGGATGAAGTGCAGGCTATTAGAGATTTAGACCATACGTCTAAATCTTTTGAAGCATTGACATCTCAGATGAATGATATGACTG TTTCGTTGAAGTCTATGGAAATGATTCCTCCTGTAGCCTCAGTAGAAGGTTCATGTCTAGGGGATGGTGGCCAAGATATTGATAAAAAAATCAGAGCTCT AAAAAAAAAGATTCGGTTGGCAGAAGCTCACCAGCAGAAAAATGCAACGGAGGAGTTGAAAGCACAACAGATGGAGAAGATGAGAAAGTTGGAAGGTTGG CGCGAGGAGCTAAAGCTTCTGGAATTGAAAAGGGGTCAACAGGAGGTATCATCATCATCATGA
AA sequence Show only first row Show all	>Lus10007180 pacid=23162080 polypeptide=Lus10007180 locus=Lus10007180.g ID=Lus10007180.BGIv1.0 annot-version=v1.0 MNELSKTLKEGERILAPTRRPDGTLRKSIRIRAGYVPQDEVAVYQPKGALLKKEMESQVFVPPGYDPALDTKPKSKSAKRNERKKEKRLQAAIEKGNNSE DVDVDSDEVQAIRDLDHTSKSFEALTSQMNDMTVSLKSMEMIPPVASVEGSCLGDGGQDIDKKIRALKKKIRLAEAHQQKNATEELKAQQMEKMRKLEGW REELKLLELKRGQQEVSSSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11400		PYM	partner of Y14-MAGO (.1.2.3)		Lus10007180 [exp]	0	1
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10018937 [exp]	4.9	0.8861
AT1G28330		DYL1, DRM1	DORMANCY-ASSOCIATED PROTEIN 1,...		Lus10013996 [exp]	7.4	0.8654
AT1G11020			RING/FYVE/PHD zinc finger supe...		Lus10017764 [exp]	14.3	0.8630
AT5G47900			Protein of unknown function (D...		Lus10036333 [exp]	15.3	0.8519
AT5G03560			Tetratricopeptide repeat (TPR)...		Lus10027932 [exp]	16.5	0.8782
AT4G19860			alpha/beta-Hydrolases superfam...		Lus10017142 [exp]	17.1	0.8773
AT4G26100		CKL1, CK1	casein kinase 1 (.1)		Lus10021580 [exp]	17.9	0.8761
AT1G47570			RING/U-box superfamily protein...		Lus10033472 [exp]	17.9	0.8488
AT2G40410			Staphylococcal nuclease homolo...		Lus10040967 [exp]	18.3	0.8240
AT5G67170			SEC-C motif-containing protein...		Lus10006255 [exp]	21.3	0.8592

Compare expression of checked genes

Lus10007180 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.