Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71790 392 / 1e-139 Subunits of heterodimeric actin filament capping protein Capz superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003086 [exp] 473 / 3e-171 AT1G71790 431 / 1e-154 Subunits of heterodimeric actin filament capping protein Capz superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G199600 [exp] 410 / 1e-146 AT1G71790 426 / 8e-153 Subunits of heterodimeric actin filament capping protein Capz superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01115 [flax] [poplar] F_actin_cap_B F-actin capping protein, beta subunit
Representative CDS sequence Show only first row Show all	>Lus10007185 pacid=23162069 polypeptide=Lus10007185 locus=Lus10007185.g ID=Lus10007185.BGIv1.0 annot-version=v1.0 ATGGAAGCAGCGCTGGGATTGATGAGAAGGATACCTCCTAAGCATTCCGTCACCGCGCTCTCGGCTCTTGTCAGCCTCTTGCCTCACCACTCCTCCGATC TCCTCTCCCAAGTCGATCAGCCCCTTCAGGTTTTATGCGATTCCGATAGTGGAAAGGAGTTCATACTGTGCGAGTACAACAGAGATGCTGATTCTTACAG GTCACCATGGTCAAACAAATACCATCCGGCACTGGAAGATGCAATCTATCCTTCTGATGGTCTGAGGAAACTAGAGATTGAAGCGAATGAAGTCTTTGCC ATTTATCGTGACCAGTATTACGAAGGTGGCATCTCATCAGTCTACCTTTGGGAAGATAACAATGAAGGTTTTGTAGCCTGTTTTCTGATAAAGAAAGATG GAGCTAGGACAGCGCATGGAAGAAGGGGATCCTTGCAGGAGGGGCTGTGGGAAGCCATTCATGTCATTGAGGTGGGACCAGAAGATGAAACGACTCGTTA TTGCTTAACCAGCACGGTAATGCTGTCACTGACCACAGATAAAGAATCATCTGGGACATTTAAACTTTCAGGATCTCTTAGACGGCAGATGAAGATGGAT CTACCATTGGCTGATGGTCACCTTTGCAACATGGGAAAGATGATAGAGGAGATGGAGGGGAAACTAAGAAACTCTCTGGATCAGGTTTATTTTGGGAAGA CGAAAGAGATGGTTTGCACTTTGCGACCACCATCAGAAGTTGTGATGAGATTGCCAGACAGCAGCAGCAGCAGCAGGAGATGA
AA sequence Show only first row Show all	>Lus10007185 pacid=23162069 polypeptide=Lus10007185 locus=Lus10007185.g ID=Lus10007185.BGIv1.0 annot-version=v1.0 MEAALGLMRRIPPKHSVTALSALVSLLPHHSSDLLSQVDQPLQVLCDSDSGKEFILCEYNRDADSYRSPWSNKYHPALEDAIYPSDGLRKLEIEANEVFA IYRDQYYEGGISSVYLWEDNNEGFVACFLIKKDGARTAHGRRGSLQEGLWEAIHVIEVGPEDETTRYCLTSTVMLSLTTDKESSGTFKLSGSLRRQMKMD LPLADGHLCNMGKMIEEMEGKLRNSLDQVYFGKTKEMVCTLRPPSEVVMRLPDSSSSSRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71790			Subunits of heterodimeric acti...		Lus10007185 [exp]	0	1
AT2G26970			Polynucleotidyl transferase, r...		Lus10041292 [exp]	15.2	0.7275
AT4G32570	ZIM	TIFY8	TIFY domain protein 8 (.1)		Lus10008101 [exp]	19.4	0.7267
AT3G02680		ATNBS1, NBS1	nijmegen breakage syndrome 1 (...		Lus10007365 [exp]	28.0	0.7129
AT1G53530			Peptidase S24/S26A/S26B/S26C f...		Lus10015272 [exp]	29.0	0.6897
AT5G48720		XRI1, XRI	x-ray induced transcript 1 (.1...		Lus10038181 [exp]	30.6	0.6824
					Lus10028270 [exp]	39.7	0.6887
AT1G31360		MED34, ATRECQ2,...	ARABIDOPSIS THALIANA RECQ 2, ...		Lus10034749 [exp]	42.4	0.6511
AT5G19020		MEF18	mitochondrial editing factor ...		Lus10019079 [exp]	43.0	0.6360
AT5G45760			Transducin/WD40 repeat-like su...		Lus10007297 [exp]	47.6	0.6754
AT1G20830		MCD1	multiple chloroplast division ...		Lus10030727 [exp]	53.1	0.6750

Compare expression of checked genes

Lus10007185 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.