Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00250 61 / 7e-10 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G00238 58 / 4e-09 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT1G61730 57 / 1e-08 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT2G25650 53 / 3e-07 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G00270 50 / 1e-06 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G00390 50 / 2e-06 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT1G66420 47 / 2e-05 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT5G14280 47 / 3e-05 GeBP DNA-binding storekeeper protein-related (.1) AT1G44810 45 / 5e-05 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010076 [exp] 379 / 4e-128 AT1G61730 58 / 5e-09 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10018859 [exp] 58 / 4e-09 AT4G00390 115 / 9e-30 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10028550 [exp] 58 / 6e-09 AT4G00390 122 / 1e-31 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10002794 [exp] 51 / 5e-07 AT4G01260 96 / 4e-23 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10005506 [exp] 50 / 2e-06 AT4G00390 108 / 9e-27 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10004772 [exp] 47 / 2e-05 AT4G01260 95 / 1e-21 DNA-binding storekeeper protein-related transcriptional regulator (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G119800 [exp] 69 / 3e-12 AT1G61730 101 / 3e-23 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.001G293900 [exp] 61 / 5e-10 AT4G25210 142 / 9e-39 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.009G088400 [exp] 61 / 7e-10 AT4G25210 133 / 2e-35 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.005G075000 [exp] 42 / 0.0008 AT1G61730 75 / 8e-15 DNA-binding storekeeper protein-related transcriptional regulator (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF04504 [flax] [poplar] DUF573 Protein of unknown function, DUF573
Representative CDS sequence Show only first row Show all	>Lus10007188 pacid=23167593 polypeptide=Lus10007188 locus=Lus10007188.g ID=Lus10007188.BGIv1.0 annot-version=v1.0 ATGGCTAAGAAGAATCGTCCAATCGAACAAGAGCAGGAGGCCGATCAGCTCAAATCCACACCCAGCACATCCTCCGCCAAAAGAAGTCCGTCGAAGGCAG CACCACAATCGGAGAACGTGCCAGACTCCGTCTCCAGTTGTTCTTCCCCTTCTCTTTCTGCCTTTGAGCTGAAACCCATCGCCGTGCAGAAAGCTTCCCA GAGGAAGTCAACCCCTAGCCCACCGAAGGAGAATAAATCAGATGATGGAAAGGGCCGGTGGAGCTTCGAAGACGAGATTTCTCTGCTTAATGCGGTTATC CAGTACAAATCTCAGATTGGCTCCGATCCTTGGTCCAACTGGGCCGCCTTTCTCGATTATATCGAGAAATCTAGATCGCTGCAGGTGAAAATACCAACTA AGGTCGCCCTAGCGATGAAGGTAAGGAAGTTTAAAAAGGACTATCTCAGCATTGTGAAAAGAAATGAAAGTGAAAGTGAGAACCAGGCTCCTGTTTTCTC TGACCCGGCTGAACGGGATTTATTTCATCTTTGTGACAAGATTTGGGGTAGTGGTGAGAATCAAAATTGTAGTTTGAAGAAGGTTAATTTAGGTCCTCAT ATGGAGGAGGATCCTGCTAAGAAGTCGAGGGGAAGTGAAGTGGCAAAGGAGAAGGAAAAAGAGGCACTTGTGGGTGTAGAGGAGGATAAGAGGAAGGCCA GTGTGAACAAGAGTAACTCTGGTATTATTTTAGGTTTGCCAATTGAGGAGCCTCCTGCCAAGAAGCGGAGGAGGACTGAAGCGAAGAAACAGAAGGAGAC TCGTGTGGTTATGGGGGATGATGAGAATTATAGTGAGAAGGGGAAGGGGAAGGAGAAGGAGGGTTTTGTAGTTATGGTGGAGGAGAATGGTGTCAATGAG GATGATGATGATGGCGAGGAGGAGGAGAATGATGCGAATGAGGGTGAAGATGAGAAGGAGAAGAATGATGTGAATGATGATGTGGAGGACAAGGAGAATG ATGAGAATGAGGATGATGATGCGGAGGAGAAGGGGAAGGAGAAGGAGAAGGGGAAGGTGAAGGAGACTGATGTGGTTAGGGAGAAGCATGAGCTATACCC TCGGGTGTTTGCTTCCATGGAAAGGAGATTGGCTTTCATGGACAAGGCACACGACGGGAATGTGTCTGATTTGAGGCAAGTATGCAATGAGATTATCGAG AAAGCTGATGAAGAAAAGTTAAAAGATTGGGAGTCGAGGTGGCGGACGCAGAAGAAGGTTGAGTTGGAGGCTTTTGTTGGGAGGAAAACCCTGGAGATTG AAGAGTCGACAGAGTGGTTGGATATCATACAGAGGTGA
AA sequence Show only first row Show all	>Lus10007188 pacid=23167593 polypeptide=Lus10007188 locus=Lus10007188.g ID=Lus10007188.BGIv1.0 annot-version=v1.0 MAKKNRPIEQEQEADQLKSTPSTSSAKRSPSKAAPQSENVPDSVSSCSSPSLSAFELKPIAVQKASQRKSTPSPPKENKSDDGKGRWSFEDEISLLNAVI QYKSQIGSDPWSNWAAFLDYIEKSRSLQVKIPTKVALAMKVRKFKKDYLSIVKRNESESENQAPVFSDPAERDLFHLCDKIWGSGENQNCSLKKVNLGPH MEEDPAKKSRGSEVAKEKEKEALVGVEEDKRKASVNKSNSGIILGLPIEEPPAKKRRRTEAKKQKETRVVMGDDENYSEKGKGKEKEGFVVMVEENGVNE DDDDGEEEENDANEGEDEKEKNDVNDDVEDKENDENEDDDAEEKGKEKEKGKVKETDVVREKHELYPRVFASMERRLAFMDKAHDGNVSDLRQVCNEIIE KADEEKLKDWESRWRTQKKVELEAFVGRKTLEIEESTEWLDIIQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00250	GeBP		DNA-binding storekeeper protei...		Lus10007188 [exp]	0	1
AT1G61730	GeBP		DNA-binding storekeeper protei...		Lus10010076 [exp]	1.0	0.9243
AT4G00390	GeBP		DNA-binding storekeeper protei...		Lus10018859 [exp]	1.4	0.9179
AT1G54850			HSP20-like chaperones superfam...		Lus10035725 [exp]	2.2	0.8661
AT3G58660			Ribosomal protein L1p/L10e fam...		Lus10005380 [exp]	6.6	0.8467
AT1G62830		ATLSD1, ATSWP1,...	ARABIDOPSIS LYSINE-SPECIFIC HI...		Lus10012283 [exp]	7.7	0.8408
AT5G02820		BIN5, RHL2	ROOT HAIRLESS 2, BRASSINOSTERO...		Lus10015052 [exp]	8.0	0.8767
AT2G28910		CXIP4	CAX interacting protein 4 (.1)		Lus10040809 [exp]	13.0	0.8469
AT2G40060		CLC2	clathrin light chain 2, Clathr...		Lus10030401 [exp]	14.0	0.8420
AT3G18880			Nucleic acid-binding, OB-fold-...		Lus10017467 [exp]	16.1	0.8424
AT5G45190			Cyclin family protein (.1.2)		Lus10038329 [exp]	20.0	0.8353

Compare expression of checked genes

Lus10007188 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.