Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01810 1225 / 0 Sec23/Sec24 protein transport family protein (.1) AT2G21630 121 / 4e-28 Sec23/Sec24 protein transport family protein (.1) AT4G14160 117 / 1e-26 Sec23/Sec24 protein transport family protein (.1.2.3) AT1G05520 115 / 5e-26 Sec23/Sec24 protein transport family protein (.1) AT3G23660 114 / 6e-26 Sec23/Sec24 protein transport family protein (.1.2) AT5G43670 92 / 6e-19 Sec23/Sec24 protein transport family protein (.1) AT2G27460 63 / 6e-10 sec23/sec24 transport family protein (.1) AT3G07100 47 / 8e-05 AtSEC24A, SEC24A, ERMO2 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010078 [exp] 1602 / 0 AT4G01810 1317 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10021963 [exp] 124 / 5e-29 AT1G05520 1321 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10019516 [exp] 119 / 3e-27 AT2G21630 1093 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10041256 [exp] 119 / 4e-27 AT1G05520 1319 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10043359 [exp] 114 / 6e-26 AT2G21630 1098 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10022219 [exp] 81 / 2e-15 AT5G43670 1098 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10008800 [exp] 79 / 9e-15 AT5G43670 912 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10021964 [exp] 67 / 2e-11 AT1G05520 486 / 9e-168 Sec23/Sec24 protein transport family protein (.1) Lus10004866 [exp] 62 / 2e-09 AT2G27460 1248 / 0.0 sec23/sec24 transport family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G112600 [exp] 1342 / 0 AT4G01810 1364 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.002G187100 [exp] 1341 / 0 AT4G01810 1352 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.019G003100 [exp] 136 / 8e-33 AT3G23660 1181 / 0.0 Sec23/Sec24 protein transport family protein (.1.2) Potri.001G307400 [exp] 134 / 3e-32 AT1G05520 1235 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.014G178500 [exp] 116 / 1e-26 AT2G21630 1028 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.010G078200 [exp] 95 / 1e-19 AT5G43670 1136 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.008G161300 [exp] 86 / 6e-17 AT5G43670 1115 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.002G238500 [exp] 73 / 4e-13 AT2G21630 767 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.004G201800 [exp] 61 / 3e-09 AT2G27460 1266 / 0.0 sec23/sec24 transport family protein (.1) Potri.009G163300 [exp] 54 / 3e-07 AT2G27460 1235 / 0.0 sec23/sec24 transport family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04810 [flax] [poplar] zf-Sec23_Sec24 Sec23/Sec24 zinc finger CL0128 [flax] [poplar] vWA-like PF04811 [flax] [poplar] Sec23_trunk Sec23/Sec24 trunk domain CL0128 [flax] [poplar] PF08033 [flax] [poplar] Sec23_BS Sec23/Sec24 beta-sandwich domain CL0128 [flax] [poplar] PF04815 [flax] [poplar] Sec23_helical Sec23/Sec24 helical domain
Representative CDS sequence Show only first row Show all	>Lus10007190 pacid=23167603 polypeptide=Lus10007190 locus=Lus10007190.g ID=Lus10007190.BGIv1.0 annot-version=v1.0 ATGGCTAATCCACATCAGTCTTCCCCTCAACCTGATAGAAGTCATGTTCTTTCTTCACCTCAACCAACAACTGGACCTCCTAGATTTCCTCCCCCAAAGT TGCAACAAGATCACCTTTCCCCTTCTGTCAGAACTCCGACTTTGATGTCGCCGGCTAATGGAGTTCCAAGTGGAAGCCCAATTCCTCATATGAACACTCC ACCTGGTCCTCCAGTCTTCACTTCACCGGTCCGCCCTGCTGCAGTGCCTTTCCGGACATCTCCAGCAACTCCTCAGCCTGTTGCCTTCTCATCAGGATCC TCATTGCCCACTTCATCACCTCCCAATTTTTCGAATGGCTCGCCTCTATCGGATCCTCAGCTTCCCCAAGCAACAGAGGACTATTCTTCTGCTGAGCAAT CACCTTGTGTTTTATTCTCAGCCAGAAAGGTTCTAAAGCAAAAAAAACTAGCAAATGCAGCTAGTTTGGGTTTTGGGGCATTGATTTCACCTGGTAAAGA GATTTTACAAGGTCCTCAAATTGTACAACGTGTTGCCCATCGCTGCCAAAACTGTGGAGCCTATGCAAATCTATATTGCAAGATATTACTTGGTTCCGGT CAGTGGCAATGTGTAGTTTGCATGTCACTGAATGGAAGTGACAGGGAATATGTTGCACCAAGTAAGGATGATCTACGAAATCTGCCAGAACTTTCGTCTC CAGTAGTGGATTATGTTCAACCTGGGAATAAGAGATCTGGTTTCATTCCCGTTTCTGATTCTAGAATGTCTGCACCTGTTGTTCTTGTCATTGATGACTG CTTGGATGAGCAACACCTGCAGCATTTACAAAGCTCCTTACATGCATTTGTTGATTCTCTTCCTCCTACAGCAAGAATAGGAATCATAACGTATGGCCGT GTGGTCTCCGTTTACGATTTTACAGAAGAATCGTTTGCTTCAGCAGATGTGCTTCCAGGAGACAAATCACCTAATTCAGAATCTTTGAAAGGGTTAATCT ATGGGAGCGGTGTGTACTTGGCACCAATGCATGCTTCGAAAGAAGTAGCAAATAGAATATTCTCGTCACTCAGACCGTACAAGTTGGACATTGCAGAAGC TTCAAGAGATCGTTGCTTGGGCACTGCAGTTGAAATAGCTCTATCTATAATTCAGGGGCCATCTGGAGAGATGTCCAGAGGTGTAGTTAAGAGGGCAGGG GGTAATAGCAGGATCATTGTATGTGCTGGTGGACCGAGTACCTATGGTCCCGGATCGGTTCCTCATTCGTTTGGGCACCCGAACTATGCTCATCTTGAAA GTACCGCCTTGAAATGGATGGAGCATCTGGGCCGTGAAGCTCACCTGCATAATACAGTAGTCGATATTTTATGCGCTGGAACTTGCCCAGTTAGAATCCC AATTTTGCAGCCTCTTGCTAAATCCTCAGGAGGTGTTCTGGTTCTTCATGATGACTTTGGTGAAGCCTTTGGCGTAAATTTGCAAAGAGCGGCTTCCAGG GCATCAGGTTCGCATGGTCTTTTGGAAATTCGATGCTCTGATGATATTCTTGTTACGCAAGTTGTCGGTCCCGGGGAAGAGGCACATGTAGACAGTGAGT TTAAAAGTGATACTTCTATCTCTATTCAGATGCTAAGTGTTGAAGAATCTCAGTGCTTTGCACTGTCAATGGAGAATAAGGGTGACATTAAGGGTGATTC TGTATATTTCCAGTTCGTCATCCAATTTTCAAATGTTTATCAGGCAGATGTTTCGAGAGTCATAACCATTAGACTACCTACTGTTGATAGTGTTTCAGCA TATCTAGACAGTGTCCATGATGAAGTGGCTGCAATATTGGTTGCGAAGAGGACTCTGCTGAGAGCCAAAAACTCTGCTGATACTATTGATATGAGGGCAT CAATAGACGAGCGAATTAAGGACATTGCTTTGAAATTTGGGGCTCAAGTGCCCAAGTCAAAACTCCGCAGATTTCCAAAAGAATTGTCTTTGTTACCGGA ACTCCTTTTCCATCTCAGAAGGGGGCCACTATTGGGAAGCATTGTTGGCCATGAGGATGAACGTTCTGTTTTAAGGAACCTGTTTCTAAATGCCTCGTTT GATCTTTCTCTCCGTATGGTAGCACCGAGATGTCTAATGCACCGGGAAGGAGGGACTTTCGAAGAATTGCCAGCCTATGACCTTGCAATGCAGTCTCACA CAGCTGTTGTTCTAGATCATGGCACAGACGTGTTCATTTGGCTGGGTGCTGAACTAGCCATGGATGAAGGTAGAAATGCAGCAGCTTTAGCAGCTTGCAG AACTTTGGCTGAAGAGCTCACTGAATCGCGATTTCCTGCTCCTAGGATCCTTGCTTTCAAGGAAGGGAGCTCTCAGGCACGGTATTTCGTCTCAAGATTG ATACCAGCACGCAAGGATCCTCCCTATGAACAGGAGGCAAGATTCCCACAGCTTCGAACATTAACGATAGAGCAGCGAACCAAGTTGAAAAGCAGCTTTC TGCACTTTGATGATCCGAGTTTCTGCGAATGGATAAGGAGTTTAAAAGTTGTGCCACCGGAACCAAGCTAA
AA sequence Show only first row Show all	>Lus10007190 pacid=23167603 polypeptide=Lus10007190 locus=Lus10007190.g ID=Lus10007190.BGIv1.0 annot-version=v1.0 MANPHQSSPQPDRSHVLSSPQPTTGPPRFPPPKLQQDHLSPSVRTPTLMSPANGVPSGSPIPHMNTPPGPPVFTSPVRPAAVPFRTSPATPQPVAFSSGS SLPTSSPPNFSNGSPLSDPQLPQATEDYSSAEQSPCVLFSARKVLKQKKLANAASLGFGALISPGKEILQGPQIVQRVAHRCQNCGAYANLYCKILLGSG QWQCVVCMSLNGSDREYVAPSKDDLRNLPELSSPVVDYVQPGNKRSGFIPVSDSRMSAPVVLVIDDCLDEQHLQHLQSSLHAFVDSLPPTARIGIITYGR VVSVYDFTEESFASADVLPGDKSPNSESLKGLIYGSGVYLAPMHASKEVANRIFSSLRPYKLDIAEASRDRCLGTAVEIALSIIQGPSGEMSRGVVKRAG GNSRIIVCAGGPSTYGPGSVPHSFGHPNYAHLESTALKWMEHLGREAHLHNTVVDILCAGTCPVRIPILQPLAKSSGGVLVLHDDFGEAFGVNLQRAASR ASGSHGLLEIRCSDDILVTQVVGPGEEAHVDSEFKSDTSISIQMLSVEESQCFALSMENKGDIKGDSVYFQFVIQFSNVYQADVSRVITIRLPTVDSVSA YLDSVHDEVAAILVAKRTLLRAKNSADTIDMRASIDERIKDIALKFGAQVPKSKLRRFPKELSLLPELLFHLRRGPLLGSIVGHEDERSVLRNLFLNASF DLSLRMVAPRCLMHREGGTFEELPAYDLAMQSHTAVVLDHGTDVFIWLGAELAMDEGRNAAALAACRTLAEELTESRFPAPRILAFKEGSSQARYFVSRL IPARKDPPYEQEARFPQLRTLTIEQRTKLKSSFLHFDDPSFCEWIRSLKVVPPEPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01810			Sec23/Sec24 protein transport ...		Lus10007190 [exp]	0	1
AT2G26100			Galactosyltransferase family p...		Lus10023955 [exp]	2.0	0.9049
AT5G13260			unknown protein		Lus10001801 [exp]	4.2	0.8753
AT2G42520			P-loop containing nucleoside t...		Lus10000849 [exp]	5.3	0.8725
AT3G09090		DEX1	DEFECTIVE IN EXINE FORMATION 1...		Lus10035533 [exp]	6.0	0.8850
AT2G19450		RDS1, DGAT1, AT...	TRIACYLGLYCEROL BIOSYNTHESIS D...		Lus10021582 [exp]	8.0	0.8589
AT1G45207			Remorin family protein (.2)		Lus10009750 [exp]	9.8	0.8659
AT2G39750			S-adenosyl-L-methionine-depend...		Lus10030155 [exp]	11.2	0.8648
AT1G72410			COP1-interacting protein-relat...		Lus10008140 [exp]	12.2	0.8823
AT1G53300		TTL1	tetratricopetide-repeat thiore...		Lus10042854 [exp]	12.4	0.8787
AT2G26100			Galactosyltransferase family p...		Lus10014451 [exp]	12.6	0.8669

Compare expression of checked genes

Lus10007190 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.