Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01790 145 / 2e-44 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010079 [exp] 349 / 1e-124 AT4G01790 139 / 5e-42 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G112200 [exp] 203 / 6e-67 AT4G01790 160 / 1e-50 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0101 [flax] [poplar] PELOTA PF01248 [flax] [poplar] Ribosomal_L7Ae Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Representative CDS sequence Show only first row Show all	>Lus10007191 pacid=23167600 polypeptide=Lus10007191 locus=Lus10007191.g ID=Lus10007191.BGIv1.0 annot-version=v1.0 ATGCGTAATAGAAAGAAAGCTAAACAACCCTCCAACTCCACACCCGTTCCCCAGGATCACTGTTGTATTCAAGGCGAACCTCTGGCTGCTCTCCTCAAAT CAATCCGCAGGGTTTTAGAATCATCTAAGACCGAGAATGGAGGAGATTCTCTTCCTCAGAAGTTCTGGTTCAAGCAACAATTTGCTATGGGAGTGAATGA AGTTACTAGGGTACTAGAACGCATGTCTCCGGCTACTGCTCATTCTCCACAACTCGAGGACAATCCTAAATCCCCTTCAGTTCAGCTTCAGGCTGTGCTG GTAGCTTCTGATTGCAACCCTAGATGGCTAACGAGGCATCTCCCGAGCTTAGCTTCGTCAAGGAAGGTGCCTCTGTTGTTCGTCAAAGGTGATCAAAAGG GTGCTGGCTCTTTGAGATTGGGTGAACTTGTTAATCTCAAAACAGCCATTGCAGTTGGTGTCAAAGTTAAGGGGAATGCTGTGAATCAGTGCCTGGAGGA GCACCTACTCATCAGAAGCAATGAAGTTGATCTCGGGAAAGAGCAGCTGACGGATAGTGACCCGGGTGCTTTGATTGCTAGAACAAGCATTGGTTGA
AA sequence Show only first row Show all	>Lus10007191 pacid=23167600 polypeptide=Lus10007191 locus=Lus10007191.g ID=Lus10007191.BGIv1.0 annot-version=v1.0 MRNRKKAKQPSNSTPVPQDHCCIQGEPLAALLKSIRRVLESSKTENGGDSLPQKFWFKQQFAMGVNEVTRVLERMSPATAHSPQLEDNPKSPSVQLQAVL VASDCNPRWLTRHLPSLASSRKVPLLFVKGDQKGAGSLRLGELVNLKTAIAVGVKVKGNAVNQCLEEHLLIRSNEVDLGKEQLTDSDPGALIARTSIG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01790			Ribosomal protein L7Ae/L30e/S1...		Lus10007191 [exp]	0	1
AT3G29130			unknown protein		Lus10023356 [exp]	1.0	0.8829
AT2G36410			Family of unknown function (DU...		Lus10023876 [exp]	1.7	0.8777
AT5G11900			Translation initiation factor ...		Lus10024986 [exp]	2.0	0.8821
AT1G60430		ARPC3	actin-related protein C3 (.1.2...		Lus10018909 [exp]	5.5	0.8486
AT5G11340			Acyl-CoA N-acyltransferases (N...		Lus10013120 [exp]	5.9	0.8317
AT1G73390			Endosomal targeting BRO1-like ...		Lus10026368 [exp]	6.7	0.8221
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Lus10032605 [exp]	6.9	0.8239
AT5G46030			unknown protein		Lus10015293 [exp]	8.7	0.8597
AT5G60335			Thioesterase superfamily prote...		Lus10009162 [exp]	9.8	0.8175
AT1G66980		GDPDL2, SNC4	Glycerophosphodiester phosphod...		Lus10022359 [exp]	11.0	0.8206

Compare expression of checked genes

Lus10007191 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.