Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49475 46 / 8e-07 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G18960 41 / 6e-05 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G01580 40 / 0.0001 B3 AP2/B3-like transcriptional factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010080 [exp] 87 / 2e-21 AT4G31680 75 / 8e-16 Transcriptional factor B3 family protein (.1) Lus10022473 [exp] 47 / 6e-07 AT3G18990 78 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10016777 [exp] 42 / 4e-05 AT3G18990 115 / 3e-29 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10009688 [exp] 41 / 0.0001 AT3G18990 113 / 2e-28 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025534 [exp] 40 / 0.0002 AT3G18990 81 / 2e-18 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025507 [exp] 40 / 0.0003 AT3G18990 91 / 1e-21 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10023079 [exp] 39 / 0.0003 AT3G18990 69 / 3e-13 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10036045 [exp] 39 / 0.0004 AT3G18990 110 / 2e-27 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10014359 [exp] 39 / 0.0006 AT3G18990 79 / 1e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G230100 [exp] 44 / 1e-05 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.010G191500 [exp] 40 / 0.0001 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 39 / 0.0004 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007192 pacid=23167608 polypeptide=Lus10007192 locus=Lus10007192.g ID=Lus10007192.BGIv1.0 annot-version=v1.0 ATGACGTCTCACTCTCTAGAGCATGGACATTTTATAGTGTTCCAGTGGGAGGGAAATTCCAACTTCTATGTTTTGGTTTTCGATATAAGCTGCTCTAAAA TTGACTATCTTGTATCCATATCTCCAAAGAAGAAGCCAGAAGAACCCAGAAGGGAGGAAGATGCAGAGTTTGATAATAATGATACTGTTGAAGAAGACAA GGATGCAGAAGATGAAGGCGACGGCGTTTCTGTTGTGCTAAATTTGGTTTCATGTCGAAGTCCGGCAAACGAAGTAAAGCAAGCTCGAAGGAAGAGCGAG CTGTCGATTTCCAGTGTATTCACGGCTGTCATCAGTAAAGCACTGGCCAGGCGCCACCGTCTAGTAAGTCTTTTCAGTTTAGAGTACAAGCAATGA
AA sequence Show only first row Show all	>Lus10007192 pacid=23167608 polypeptide=Lus10007192 locus=Lus10007192.g ID=Lus10007192.BGIv1.0 annot-version=v1.0 MTSHSLEHGHFIVFQWEGNSNFYVLVFDISCSKIDYLVSISPKKKPEEPRREEDAEFDNNDTVEEDKDAEDEGDGVSVVLNLVSCRSPANEVKQARRKSE LSISSVFTAVISKALARRHRLVSLFSLEYKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49475	B3		AP2/B3-like transcriptional fa...		Lus10007192 [exp]	0	1
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10010022 [exp]	1.0	0.8948
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10010023 [exp]	4.9	0.7774
AT5G49350			Glycine-rich protein family (....		Lus10037727 [exp]	6.9	0.7491
AT2G47000		PGP4 ,MDR4, ABC...	MULTIDRUG RESISTANCE 4, ARABID...		Lus10004520 [exp]	9.2	0.8283
AT5G49360		ATBXL1, BXL1	beta-xylosidase 1 (.1)		Lus10037728 [exp]	9.7	0.7605
AT3G51530			F-box/RNI-like/FBD-like domain...		Lus10003696 [exp]	26.8	0.6681
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10041082 [exp]	31.6	0.6947
					Lus10039495 [exp]	32.1	0.6916
AT3G01140	MYB	NOK, ATMYB106	NOECK, myb domain protein 106 ...		Lus10030442 [exp]	42.3	0.6732
AT5G43330		c-NAD-MDH2	cytosolic-NAD-dependent malate...		Lus10021184 [exp]	44.2	0.6762

Compare expression of checked genes

Lus10007192 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.