Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01690 732 / 0 PPOX, HEMG1, PPO1 Flavin containing amine oxidoreductase family (.1.2) AT5G14220 159 / 2e-42 HEMG2, MEE61, PPO2 MATERNAL EFFECT EMBRYO ARREST 61, Flavin containing amine oxidoreductase family (.1.2) AT1G57770 47 / 3e-05 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT1G02350 0 / 1 protoporphyrinogen oxidase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010082 [exp] 954 / 0 AT4G01690 823 / 0.0 Flavin containing amine oxidoreductase family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G186300 [exp] 775 / 0 AT4G01690 822 / 0.0 Flavin containing amine oxidoreductase family (.1.2) Potri.014G111600 [exp] 771 / 0 AT4G01690 845 / 0.0 Flavin containing amine oxidoreductase family (.1.2) Potri.001G333500 [exp] 147 / 5e-38 AT5G14220 701 / 0.0 MATERNAL EFFECT EMBRYO ARREST 61, Flavin containing amine oxidoreductase family (.1.2) Potri.015G074600 [exp] 47 / 3e-05 AT5G13700 395 / 5e-134 polyamine oxidase 1 (.1) Potri.017G144001 [exp] 47 / 4e-05 AT1G65840 721 / 0.0 polyamine oxidase 4 (.1) Potri.004G075800 [exp] 43 / 0.0006 AT1G65840 728 / 0.0 polyamine oxidase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01593 [flax] [poplar] Amino_oxidase Flavin containing amine oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10007194 pacid=23167612 polypeptide=Lus10007194 locus=Lus10007194.g ID=Lus10007194.BGIv1.0 annot-version=v1.0 ATGGCGTCTCTCACCGAATTCTCTATTTTCCGGCCGACTCACTCCCTGGTTCCGTCGTTCTCCTATCCCCGTCCGAATTTAATTGCTCGTCCTCCTCTTA AGCTCCGATGCTCAATCACTGAGCAGCCGGCCACGTTCCCCCCTTTGAACCTCGACGGCGAATCACAATCCAAGGCCTCGCGCTCTACCACAGCCGATTG CGTTATAGTCGGAGGTGGAATCAGCGGACTCTGCATCGCTCAGGCGTTGGCCACCAAACACAACGAGGTTGCTCAGAATGTGATCGTCGCTGAGGCCAGT GACCGCGTTGGCGGCAACATCATCACCGTTGAAAGAGACGGTTATCTATGGGAAGAGGGGCCAAACAGCTTCCAGCCATCAGATTCCATGCTCAGCTTGG TGGTAGACAGTGGTTTGAAAGATGATTTAGTGTTGGGCGATCCTGAAGCCCCGCGTTTTGTGCTGTGGGATGGGAAATTGAGGCCTGTACCGTCCAAGCC TACTGACTTGCCAGTCTTTGACCTTATGAGCATTGGTGGGAAACTCAGAGCTGGCTTTGGTGCTCTTGGACTTCGACCTCCACCGCCAGGTCGTGAAGAA TCGATTGAAGAATTCGTAAGGCGTAACCTGGGAGATGAGGTTTTTGAACGTTTGATTGAGCCATTTTGCTCAGGTGACAAGTTGGTTTATCGGACTAAGA GTGTCAATTTTTTCGGCAAGCGCCCCAGTCTCTTAGATCTTTGGAAGTCTTTGTTCTGCATAGGTGTTTATGCTGGTGACCCCTCGAAATTAAGCATGAA AGCAGCCTTTGGAAAAGTGTGGAACCTTGAGCAAACTGGTGGTAGTATCATTGGCGGGGCTTTCAAAGCGATACAGGAGAGAAGGAGAAATCCGAAGCCT CCTCGAGACCCGGGACTTCCAAAACCAAAGGGCCAAACTGTAGGATCTTTTAGAAAGGGACTTACCATGTTACCAGTGGCACTTGCAAAAGGATTGGGTG ACAAGGTCAAATTATCTTGGAAGCTTTCAAGTATCAACAAGTTGGAAAGTGGAGGATATAGCTTGACCTTTGAAACGCCCGATGGGCTGGTAGCTGTACA GTGCAAAAGCGTAGTACTAACTGTTCCATCCCATATCGCAAGCAATCTCTTGCAGCCACTTTCGGCTGTTGCTGCTAAAGAGCTGTCAACATTTTACTAT CCACCTGTCGCTGCAGTAGCCATTTCATACCCAAAAGAAGCAATACGACCAGAGTGCTTAATTGATGGGGAACTCAAGGGTTTTGGCCAGCTGCATCCAC GAAGCCAAGGAGTGGAAACGCTTGGAACGATTTACAGCTCAGCTCTATTTCCTAATCGTACACCAGCTGGAAGAGTCTTGCTATCGAACTACATTGGAGG TGCTACTAACCCCGGAATTTTATCCAAGACAGAGAGCCAACTTGTAGAAGCAGTGGACCGTGATTTGAGAAAGATGCTGATAAAGGCCGATGCAAAGGAT CCATTGAAACTGGGAGTTAAGGTGTGGCCAAAAGCGATTCCGCAGTTCTTAGTAGGTCATCTTGATACCCTGGAGTCAGCGAAAAGTGCTCTGAAGGACA GTGGGCTGCAAGGATTGTATCTGGGAGGAAACTATGCATCTGGTGTTGCTTTGGGGCGATGTGTAGAAGCAGCTTATGAGACAGCAGCAGAAGTTACAGA TTACCTCACCCAATACGCGTACAAATGA
AA sequence Show only first row Show all	>Lus10007194 pacid=23167612 polypeptide=Lus10007194 locus=Lus10007194.g ID=Lus10007194.BGIv1.0 annot-version=v1.0 MASLTEFSIFRPTHSLVPSFSYPRPNLIARPPLKLRCSITEQPATFPPLNLDGESQSKASRSTTADCVIVGGGISGLCIAQALATKHNEVAQNVIVAEAS DRVGGNIITVERDGYLWEEGPNSFQPSDSMLSLVVDSGLKDDLVLGDPEAPRFVLWDGKLRPVPSKPTDLPVFDLMSIGGKLRAGFGALGLRPPPPGREE SIEEFVRRNLGDEVFERLIEPFCSGDKLVYRTKSVNFFGKRPSLLDLWKSLFCIGVYAGDPSKLSMKAAFGKVWNLEQTGGSIIGGAFKAIQERRRNPKP PRDPGLPKPKGQTVGSFRKGLTMLPVALAKGLGDKVKLSWKLSSINKLESGGYSLTFETPDGLVAVQCKSVVLTVPSHIASNLLQPLSAVAAKELSTFYY PPVAAVAISYPKEAIRPECLIDGELKGFGQLHPRSQGVETLGTIYSSALFPNRTPAGRVLLSNYIGGATNPGILSKTESQLVEAVDRDLRKMLIKADAKD PLKLGVKVWPKAIPQFLVGHLDTLESAKSALKDSGLQGLYLGGNYASGVALGRCVEAAYETAAEVTDYLTQYAYK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01690		PPOX, HEMG1, PP...	Flavin containing amine oxidor...		Lus10007194 [exp]	0	1
AT5G11580			Regulator of chromosome conden...		Lus10038724 [exp]	2.2	0.9233
AT2G45770		FRD4, CPFTSY	FERRIC CHELATE REDUCTASE DEFEC...		Lus10036570 [exp]	2.8	0.9129
AT2G41680		NTRC	NADPH-dependent thioredoxin re...		Lus10042048 [exp]	4.0	0.8850
AT1G53250			unknown protein		Lus10042840 [exp]	4.0	0.9014
AT5G11470			bromo-adjacent homology (BAH) ...		Lus10038628 [exp]	4.9	0.8718
AT2G20725			CAAX amino terminal protease f...		Lus10018585 [exp]	5.5	0.8911
AT5G27560			Domain of unknown function (DU...		Lus10004486 [exp]	5.9	0.8994
AT3G07670			Rubisco methyltransferase fami...		Lus10016087 [exp]	8.9	0.8618
AT4G29670		ACHT2	atypical CYS HIS rich thiored...		Lus10040554 [exp]	10.5	0.8748
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10033026 [exp]	11.4	0.8762

Compare expression of checked genes

Lus10007194 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.