Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42905 46 / 8e-07 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G25270 40 / 0.0001 Ribonuclease H-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042473 [exp] 49 / 7e-08 ND / Lus10007550 [exp] 46 / 1e-07 AT5G42905 44 / 1e-06 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G152100 [exp] 39 / 0.0002 AT1G69700 102 / 1e-25 HVA22 homologue C (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007199 pacid=23167584 polypeptide=Lus10007199 locus=Lus10007199.g ID=Lus10007199.BGIv1.0 annot-version=v1.0 ATGGATCTTGACTGGTTGAACTGGTACCTCTCCATGTTATGGTATGGTTGGAAACAACGGAATCGAATCACTCATGGATCAGATCCTTGGCCGGAAATAG CGTTTTGGCAGATGGTCCGCACCTTTGCAGGGGAGCTTCAGGCCCTTCAGTCCTGTGATCCAAAGCCGGTGGTTGTTCCTCGCTGGTTTGGTTGGCAGAA ACCTCAGTCTGGATGGATTAAGATTAACGTTGATGGTAGTTGTCAGGCTGAGCTGAATTCTGCAGCTTTTAGCAGCGTACTGCGTGATGAAGATGGAGGG TGGATTGCCACAAAACAACAATGA
AA sequence Show only first row Show all	>Lus10007199 pacid=23167584 polypeptide=Lus10007199 locus=Lus10007199.g ID=Lus10007199.BGIv1.0 annot-version=v1.0 MDLDWLNWYLSMLWYGWKQRNRITHGSDPWPEIAFWQMVRTFAGELQALQSCDPKPVVVPRWFGWQKPQSGWIKINVDGSCQAELNSAAFSSVLRDEDGG WIATKQQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42905			Polynucleotidyl transferase, r...		Lus10007199 [exp]	0	1
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Lus10007538 [exp]	9.1	0.7849
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10011259 [exp]	15.6	0.7252
AT3G03305			Calcineurin-like metallo-phosp...		Lus10026788 [exp]	16.3	0.7470
AT5G09890			Protein kinase family protein ...		Lus10042650 [exp]	19.1	0.7289
AT1G31850			S-adenosyl-L-methionine-depend...		Lus10033277 [exp]	19.6	0.7230
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10003526 [exp]	19.8	0.7586
AT3G47570			Leucine-rich repeat protein ki...		Lus10030638 [exp]	20.3	0.7032
AT4G32410		AtCESA1, RSW1, ...	RADIALLY SWOLLEN 1, cellulose ...		Lus10028597 [exp]	20.5	0.7603
AT1G03905		ABCI19	ATP-binding cassette I19, P-lo...		Lus10024914 [exp]	24.7	0.7079
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10002940 [exp]	25.5	0.7577

Compare expression of checked genes

Lus10007199 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.