Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62060 580 / 0 Pectinacetylesterase family protein (.1) AT2G46930 570 / 0 Pectinacetylesterase family protein (.1) AT3G05910 556 / 0 Pectinacetylesterase family protein (.1.2) AT5G26670 548 / 0 Pectinacetylesterase family protein (.1.2) AT1G57590 533 / 0 Pectinacetylesterase family protein (.1) AT4G19420 437 / 4e-152 Pectinacetylesterase family protein (.1.2) AT1G09550 414 / 3e-143 Pectinacetylesterase family protein (.1) AT5G23870 404 / 4e-139 Pectinacetylesterase family protein (.1.2.3) AT3G09410 399 / 8e-137 Pectinacetylesterase family protein (.1.3) AT4G19410 383 / 4e-131 Pectinacetylesterase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010084 [exp] 685 / 0 AT5G26670 491 / 9e-174 Pectinacetylesterase family protein (.1.2) Lus10009966 [exp] 637 / 0 AT3G62060 613 / 0.0 Pectinacetylesterase family protein (.1) Lus10038024 [exp] 634 / 0 AT3G62060 610 / 0.0 Pectinacetylesterase family protein (.1) Lus10034767 [exp] 417 / 3e-144 AT4G19420 574 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10033305 [exp] 417 / 3e-144 AT4G19420 572 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10035682 [exp] 407 / 4e-140 AT4G19420 556 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10039238 [exp] 405 / 1e-139 AT5G23870 513 / 0.0 Pectinacetylesterase family protein (.1.2.3) Lus10037269 [exp] 402 / 2e-136 AT4G19420 548 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10033301 [exp] 395 / 6e-136 AT5G45280 546 / 0.0 Pectinacetylesterase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G110900 [exp] 588 / 0 AT3G62060 611 / 0.0 Pectinacetylesterase family protein (.1) Potri.013G000900 [exp] 573 / 0 AT3G05910 629 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.005G001500 [exp] 568 / 0 AT3G05910 602 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.010G004400 [exp] 531 / 0 AT5G26670 559 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.006G084900 [exp] 428 / 4e-148 AT3G09410 570 / 0.0 Pectinacetylesterase family protein (.1.3) Potri.015G145400 [exp] 424 / 4e-147 AT5G23870 509 / 0.0 Pectinacetylesterase family protein (.1.2.3) Potri.004G234100 [exp] 419 / 2e-144 AT4G19420 597 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.012G142300 [exp] 405 / 1e-139 AT5G23870 511 / 0.0 Pectinacetylesterase family protein (.1.2.3) Potri.004G233900 [exp] 402 / 1e-138 AT5G45280 567 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.003G046200 [exp] 387 / 2e-132 AT5G45280 541 / 0.0 Pectinacetylesterase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF03283 [flax] [poplar] PAE Pectinacetylesterase
Representative CDS sequence Show only first row Show all	>Lus10007200 pacid=23167588 polypeptide=Lus10007200 locus=Lus10007200.g ID=Lus10007200.BGIv1.0 annot-version=v1.0 ATGGAGTCAAAGCAGCAGCAGCTCTTACTGCTGCTTTGCCTCTTCTTTTCTTTAACCATTTCCATTGTTTCTGCTGATGTCACCCCCGGATCTGATTCCC TCACTTACGACATCTCCTCCTTAGCCACCACCTCCGCCGTCACCACCGCCGCCGCCGCTTTACTCAGCTCAGCTCAGCCCCAACCTGTAATGGTTCCCCT CTCTCTCATCCCTGGAGCTGATTCCAAAGGAGCTGTCTGTTTGGATGGGTCACTTCCTGGTTACCATTTCCACCGTGGCTCTGGAACCGGTGCCAACCGT TGGCTCATTCAGTTGGAGGGTGGCGGATGGTGCAACTCGCTTAGGACTTGTCTTTATAGGAGAGGTTCTCGACATGGTTCATCGAAATTCATGGAGAAGT TTATACCTTTCACTGGTATACTGAGTGATAAAGCAGAATACAATCCTGATTTCTATAACTGGAATAGGATCAAGCTTCGTTATTGCGATGGGGCTTCTTT CACCGGTGATAGCCAGAATAAGGCTGCGAAACTGTACTACAGAGGGCAACGTATCTGGTCTGCAGCCATGGAACACTTCATGACCCTTGGAATGAAGTCT GCAAACCAGGTTCTTCTTTCTGGTTGCTCCGCGGGTGGTCTGGCATCGATAATACACTGTGATGAGTTTGGGGCCTTGTTTCCTAGATCTACCAAAGTCA AATGCTTGAGTGACGCCGGAATGTTTCTTGATGCAAAGGATGTTTCTGGTGGGCGCACCATGAGGAACTTCTACAGTGGAGTGATTAACATTCTGCAACC GCAGAAGGACCTACCATCTTCTTGCACCAACCACCTGGATTCGACTTCGTGCTTCTTTCCTCAGAATTTGATCGGCAACATAAAGACACCAATGTTCGTG CTGAATGCAGCCTATGATGCATGGCAGATTCAAGCTAGTTTAGCTCCACGAGCTGCTGATCCGCAAGGCCATTGGACTGCCTGCAAAAATAACCATGCAG CTTGTAACTCATCACAGATCAACTTCTTTCAAGACTTCAGGATCCAAATGCTGAAAGCAGTGACAAGGTTCGCCATGTCGAAACCGAACGGGCTGTTCAT AAACTCTTGTTTTGCGCACTGCCAGTCTGAAAGACAAGACACTTGGTTTGCGGATGATTCTCCAGTCTTACATTCAAAGACGATAGCGCAATCAGTAGGA GACTGGTACTTCGATCGAGCGGCAGTGAAAGCTATTGACTGCCCGTATCCATGTGACAACAGCTGCCATAATCTAAGGTTCAACTGA
AA sequence Show only first row Show all	>Lus10007200 pacid=23167588 polypeptide=Lus10007200 locus=Lus10007200.g ID=Lus10007200.BGIv1.0 annot-version=v1.0 MESKQQQLLLLLCLFFSLTISIVSADVTPGSDSLTYDISSLATTSAVTTAAAALLSSAQPQPVMVPLSLIPGADSKGAVCLDGSLPGYHFHRGSGTGANR WLIQLEGGGWCNSLRTCLYRRGSRHGSSKFMEKFIPFTGILSDKAEYNPDFYNWNRIKLRYCDGASFTGDSQNKAAKLYYRGQRIWSAAMEHFMTLGMKS ANQVLLSGCSAGGLASIIHCDEFGALFPRSTKVKCLSDAGMFLDAKDVSGGRTMRNFYSGVINILQPQKDLPSSCTNHLDSTSCFFPQNLIGNIKTPMFV LNAAYDAWQIQASLAPRAADPQGHWTACKNNHAACNSSQINFFQDFRIQMLKAVTRFAMSKPNGLFINSCFAHCQSERQDTWFADDSPVLHSKTIAQSVG DWYFDRAAVKAIDCPYPCDNSCHNLRFN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62060			Pectinacetylesterase family pr...		Lus10007200 [exp]	0	1
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10013929 [exp]	1.0	0.8877
AT1G31850			S-adenosyl-L-methionine-depend...		Lus10033277 [exp]	2.8	0.8320
AT2G38840			Guanylate-binding family prote...		Lus10024841 [exp]	6.0	0.7950
AT4G35320			unknown protein		Lus10022985 [exp]	6.7	0.8200
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Lus10027195 [exp]	8.1	0.7999
AT4G01680	MYB	ATMYB55	myb domain protein 55 (.1.2.3)		Lus10009263 [exp]	8.5	0.7819
AT1G31850			S-adenosyl-L-methionine-depend...		Lus10034729 [exp]	8.8	0.7914
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10043271 [exp]	9.9	0.7715
AT4G09810			Nucleotide-sugar transporter f...		Lus10006810 [exp]	10.2	0.7672
AT1G21000			PLATZ transcription factor fam...		Lus10035554 [exp]	12.7	0.7818

Compare expression of checked genes

Lus10007200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.