Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01660 741 / 0 ATABC1, ATATH10, ABC1At ABC transporter 1 (.1) AT1G65950 112 / 6e-26 Protein kinase superfamily protein (.1) AT5G64940 102 / 1e-22 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) AT5G50330 98 / 3e-21 Protein kinase superfamily protein (.1.2) AT3G07700 98 / 5e-21 Protein kinase superfamily protein (.1.2.3) AT5G24810 98 / 6e-21 ABC1 family protein (.1.2) AT4G24810 92 / 1e-19 Protein kinase superfamily protein (.1.2.3) AT1G71810 93 / 2e-19 Protein kinase superfamily protein (.1) AT1G79600 84 / 1e-16 Protein kinase superfamily protein (.1) AT2G39190 79 / 6e-15 ATATH8 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010085 [exp] 1162 / 0 AT4G01660 780 / 0.0 ABC transporter 1 (.1) Lus10038017 [exp] 920 / 0 AT4G01660 772 / 0.0 ABC transporter 1 (.1) Lus10005833 [exp] 122 / 7e-32 AT4G01660 129 / 6e-35 ABC transporter 1 (.1) Lus10009257 [exp] 115 / 1e-30 AT4G01660 78 / 2e-18 ABC transporter 1 (.1) Lus10007202 [exp] 108 / 3e-28 AT4G01660 62 / 6e-13 ABC transporter 1 (.1) Lus10036636 [exp] 101 / 6e-22 AT5G64940 1087 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Lus10006363 [exp] 99 / 2e-21 AT3G07700 1066 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10026971 [exp] 98 / 7e-21 AT5G24810 1038 / 0.0 ABC1 family protein (.1.2) Lus10012317 [exp] 97 / 1e-20 AT3G07700 1051 / 0.0 Protein kinase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G185400 [exp] 828 / 0 AT4G01660 691 / 0.0 ABC transporter 1 (.1) Potri.004G075100 [exp] 107 / 4e-24 AT1G65950 660 / 0.0 Protein kinase superfamily protein (.1) Potri.007G082500 [exp] 102 / 2e-22 AT5G64940 1081 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.005G083200 [exp] 100 / 8e-22 AT5G64940 1068 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.014G168600 [exp] 100 / 1e-21 AT3G07700 1038 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.002G061000 [exp] 96 / 2e-20 AT1G71810 915 / 0.0 Protein kinase superfamily protein (.1) Potri.015G091000 [exp] 93 / 9e-20 AT5G50330 752 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G093600 [exp] 93 / 1e-19 AT4G24810 723 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.018G003600 [exp] 88 / 6e-18 AT5G24810 956 / 0.0 ABC1 family protein (.1.2) Potri.018G003400 [exp] 85 / 6e-17 AT5G24810 1250 / 0.0 ABC1 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF03109 [flax] [poplar] ABC1 ABC1 family
Representative CDS sequence Show only first row Show all	>Lus10007201 pacid=23167586 polypeptide=Lus10007201 locus=Lus10007201.g ID=Lus10007201.BGIv1.0 annot-version=v1.0 ATGACTTCGTTTAAGAACCTAAGCAGACTCCTCGATGGCGTCTCCCTGGTCGCCAAGGAGATCGCGCTGCGCTCCCCTGCTCTTGAAGCTGCCTCTAAGG GAGACGTCCAAACCCTAATCTCATCCACCACCAGAAAGGCATTGCTCGCCGCCACCGACTTGTCTGGCCTCACCAGAGGGAAAGTCCGCCAGTTCTCTGC CCCGCGACCAAAGGAGTCCGTCGTCTACTTTGACCGAACCAATGAAGCGGAGGAACCCATCCCAGTCCAGGCGCAACCGCTGAGCGATGGCCCTGACGAC AATGTCGCTCGTGAAGATCCGGTGGTTGTCGCGGAAAAGGTTAGCCAAGATATTGAAATTCCCAACCGAGAGCTGAAACGTGAATTGCTCAAGGAGGTTG AGGATCGGAATCATCAGGATGACAGTGGCATTGTTGTAGGTGAAGAGGTGACACCACCGGTGCCGGTTATCACGAATGCGACGGTAACAACGCAGACGAG GAGGAAATTGAGGGAGAGAAGAGTTCCTTCCACTCCTTTTTCAAGGGCGATGGGGTTTGCTGGTCTAGGAGCTGGTCTTGTATGGGGGACAGTCGAAGAA GCTACGAAAAGGCTTGTCTATGGCACCCCGCCTTCACAAGGAAAGCAGTCTGCTATTTCCCCATTTCTATCTGATAAAAATGCAGAGCGTTTGGCGCTGG CACTTTGTAGGATGCGTGGGGCTGCTCTCAAAGTTGGACAGATGTTAAGTATGCAGGACGAGTCTCTTGTTCCCGCTCCGATCTTGGCTGCTTTAGATAT CGTTCGCCAGGGAGCAGACGTGATGCCAAGGAAGCAGCTGAATCAAGTTTTGAATGCTGAGTTGGGGCCTGATTGGTCTACTAAGTTAACCAGTTTTGAC TATGAACCACTTGCTGCTGCAAGTATTGGGCAGGTGCACCAAGCAGTTACAAAAGATGGATTCAAAGTTGCAATGAAAATCCAGTATCCTGGTGTTGCAA ACAGTATCGAAAGTGACATTGATAATGTTAAACTTCTTTTAGACTATACAAACTTAATTCCTGAAGGGCTCTATCTTGACAAAGCGATGAAGGTGGCAAG AGAGGAATTAGCTCGTGAGTGTGACTACAAGTTGGAGGCAGATAACCAGAAACGTTTCCGTGATCTGATCTCCGGCAGGAAAGGGTTCTCTGTTCCTTCT GTTGTAGATGAACTCTCAAGCACAAGAGTCCTAACCACTGAGCTAGTTTCTGGAGTTTCCATTGACAAGGTTACATCGCTAGACCAAGAAACCCGGACTT ACGTGGGGAGAAAGCTGCTGGAGCTGACATTGTTGGAGTTGTTTGACTTCCGCTTTATGCAGACGGATCCTAACTGGGGAAACTTCTTGTATGAAGATAC CACAAAGACAATCAATCTCATAGACTTCGGTGCAGCTAGGGAGTATCCGAAACGCTTTGTCGACGACTATCTGAGAATGGTTCTAGCATGTGCAAACCGC GACAAAGATGCTGTAATAGAGATGTCAAGAAGGCTCGGGTTCCTTGTAGGACAAGAATCAGATGAAATGCTGGAAGCTCATGTTGAAGCTGCATTCGTCG TGGGAATGCCGTTTGCTAAACCTGGTGGGTATGATTTCAGTGCGAACAATGTGACTCATAATCTGACAGCGCTAGGGGCTAAAATGCTGAAGCATAGGCT GACCCCGCCCCCAGATGAGGTGTATAGCCTTCACAGGAAGCTCTCCGGTGCGTTCTTAGCCTGCATCAAGCTCGGTGCAATCGTACCATGCCGGGAAATG TTGGTGGACATCTATGATCATCATCGGTTTGGTGAAGACGCCGATGGTGACATGTTATGGAGTAGCTCAGTTTAG
AA sequence Show only first row Show all	>Lus10007201 pacid=23167586 polypeptide=Lus10007201 locus=Lus10007201.g ID=Lus10007201.BGIv1.0 annot-version=v1.0 MTSFKNLSRLLDGVSLVAKEIALRSPALEAASKGDVQTLISSTTRKALLAATDLSGLTRGKVRQFSAPRPKESVVYFDRTNEAEEPIPVQAQPLSDGPDD NVAREDPVVVAEKVSQDIEIPNRELKRELLKEVEDRNHQDDSGIVVGEEVTPPVPVITNATVTTQTRRKLRERRVPSTPFSRAMGFAGLGAGLVWGTVEE ATKRLVYGTPPSQGKQSAISPFLSDKNAERLALALCRMRGAALKVGQMLSMQDESLVPAPILAALDIVRQGADVMPRKQLNQVLNAELGPDWSTKLTSFD YEPLAAASIGQVHQAVTKDGFKVAMKIQYPGVANSIESDIDNVKLLLDYTNLIPEGLYLDKAMKVAREELARECDYKLEADNQKRFRDLISGRKGFSVPS VVDELSSTRVLTTELVSGVSIDKVTSLDQETRTYVGRKLLELTLLELFDFRFMQTDPNWGNFLYEDTTKTINLIDFGAAREYPKRFVDDYLRMVLACANR DKDAVIEMSRRLGFLVGQESDEMLEAHVEAAFVVGMPFAKPGGYDFSANNVTHNLTALGAKMLKHRLTPPPDEVYSLHRKLSGAFLACIKLGAIVPCREM LVDIYDHHRFGEDADGDMLWSSSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01660		ATABC1, ATATH10...	ABC transporter 1 (.1)		Lus10007201 [exp]	0	1
AT1G08660		MGP2	MALE GAMETOPHYTE DEFECTIVE 2 (...		Lus10035162 [exp]	2.4	0.8164
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Lus10019420 [exp]	4.9	0.7728
AT5G64030			S-adenosyl-L-methionine-depend...		Lus10020894 [exp]	11.7	0.7623
AT1G04910			O-fucosyltransferase family pr...		Lus10032603 [exp]	12.1	0.7818
AT5G56090		COX15	cytochrome c oxidase 15 (.1)		Lus10033332 [exp]	17.0	0.7712
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Lus10043276 [exp]	21.5	0.7545
AT4G39690			unknown protein		Lus10022509 [exp]	25.7	0.7000
AT3G49710			Pentatricopeptide repeat (PPR)...		Lus10020081 [exp]	26.8	0.7469
AT1G64650			Major facilitator superfamily ...		Lus10017322 [exp]	28.1	0.7639
AT1G29470			S-adenosyl-L-methionine-depend...		Lus10042767 [exp]	28.9	0.7571

Compare expression of checked genes

Lus10007201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.