Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01650 256 / 9e-86 Polyketide cyclase / dehydrase and lipid transport protein (.1.2) AT5G08720 96 / 1e-21 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010086 [exp] 513 / 0 AT4G01650 257 / 2e-86 Polyketide cyclase / dehydrase and lipid transport protein (.1.2) Lus10035962 [exp] 82 / 5e-17 AT5G08720 855 / 0.0 unknown protein Lus10025701 [exp] 81 / 9e-17 AT5G08720 832 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G110600 [exp] 292 / 9e-99 AT4G01650 259 / 2e-86 Polyketide cyclase / dehydrase and lipid transport protein (.1.2) Potri.002G185100 [exp] 288 / 5e-97 AT4G01650 246 / 9e-82 Polyketide cyclase / dehydrase and lipid transport protein (.1.2) Potri.005G070700 [exp] 85 / 5e-18 AT5G08720 906 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF03364 [flax] [poplar] Polyketide_cyc Polyketide cyclase / dehydrase and lipid transport
Representative CDS sequence Show only first row Show all	>Lus10007203 pacid=23167610 polypeptide=Lus10007203 locus=Lus10007203.g ID=Lus10007203.BGIv1.0 annot-version=v1.0 ATGTCGATTTTCCGCGAATTTCATACGGAGGAGCAGCAACCAGCTGTAACAAAATCCCAACCGCACGGAATAATGCGGGCCTTGGCACTTCCAGCTCCAC ATTCCCATTTCCATTCTTATCCTTCACTCCTCCGTCCTTTCTCCTCCTTTACCGCCACCTCCTCCGCGGCGACCGATTTTAATTCCCCGCTGCTTCTCAC CGAATCGACTCACTCGAGACTTTCGCCCATTAAGTCGCCGTCGCCGTCGTCTCGGTATCAGTCCACGCTTTCCACGTCCTGCTCTGGCACCGATCCTACT TCGGTCGACGATTCCGGCAACACCGATGATGTTGATTCCTTTTTGTTTACAGGCGAGGATTCGGATGGAGAAACGAACGGCGGCATCTCCATCGTTGTAC AGAAGGTGGGACCAAACTCGAGGAGAATTAGATCCAAAATCTCTATTGAGGCAAGCCTCGACGCCATTTGGAGCATATTGACCGATTACGAGAGATTATC GGACTTCATACCTGGACTCGCCGTCAGCAAATTGATTGAGAAGAAGGACAATTTCGCGAGACTTTATCAGATTGGACAGCAGAAGTTGCCATTGGGATTG AAATTCAATGCCAAGGCGGTTCTGGATTGCTACGAGAAGGAGTTGGAGACTTTGTCCCTGGGGAAGAAGAGGGATATTGAATTCAAGATGACAGAAGGTG ACTTCCAATTCTTTGAAGGAAAGTGGTCCATTGAACAGGTGAGCAAGCCAAGTGTGGAATTGGTGGAATCCTCTCAAGATAAGGATTTCGAGACAACACT GTCGTACTCTGTAGATATCAAACCAAAACTTTGGTTGCCTGTGCACCTAATTGAAGGCAGAATATGCAAGGAGATCAAAACTAACCTTTCTTGCATTAGA GAAGAAGCACAGAAAACAATTGGCGAAACTCTGCATGCTTAA
AA sequence Show only first row Show all	>Lus10007203 pacid=23167610 polypeptide=Lus10007203 locus=Lus10007203.g ID=Lus10007203.BGIv1.0 annot-version=v1.0 MSIFREFHTEEQQPAVTKSQPHGIMRALALPAPHSHFHSYPSLLRPFSSFTATSSAATDFNSPLLLTESTHSRLSPIKSPSPSSRYQSTLSTSCSGTDPT SVDDSGNTDDVDSFLFTGEDSDGETNGGISIVVQKVGPNSRRIRSKISIEASLDAIWSILTDYERLSDFIPGLAVSKLIEKKDNFARLYQIGQQKLPLGL KFNAKAVLDCYEKELETLSLGKKRDIEFKMTEGDFQFFEGKWSIEQVSKPSVELVESSQDKDFETTLSYSVDIKPKLWLPVHLIEGRICKEIKTNLSCIR EEAQKTIGETLHA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01650			Polyketide cyclase / dehydrase...		Lus10007203 [exp]	0	1
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10000049 [exp]	3.0	0.9155
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Lus10032553 [exp]	4.9	0.8774
AT2G41310		ARR8, ATRR3	RESPONSE REGULATOR 8, response...		Lus10007885 [exp]	7.5	0.8947
AT5G51520			Plant invertase/pectin methyle...		Lus10031712 [exp]	9.3	0.8975
AT5G66440			unknown protein		Lus10041775 [exp]	11.1	0.8932
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Lus10013715 [exp]	16.1	0.8898
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Lus10031315 [exp]	17.0	0.8895
AT5G41940			Ypt/Rab-GAP domain of gyp1p su...		Lus10023237 [exp]	17.2	0.8709
AT1G05010		ACO4, EAT1, EFE	ethylene forming enzyme, ethyl...		Lus10015153 [exp]	22.4	0.8721
AT5G50000			Protein kinase superfamily pro...		Lus10042129 [exp]	22.6	0.8306

Compare expression of checked genes

Lus10007203 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.