Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004531 [exp] 621 / 0 AT2G24430 50 / 2e-06 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Lus10008240 [exp] 514 / 0 AT1G33060 50 / 1e-06 NAC 014 (.1.2) Lus10008200 [exp] 343 / 5e-119 ND 43 / 6e-05 Lus10010074 [exp] 304 / 8e-93 AT1G02520 1591 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10033281 [exp] 172 / 6e-50 AT1G71930 57 / 4e-09 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Lus10022965 [exp] 168 / 1e-48 AT2G24430 62 / 1e-10 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Lus10033279 [exp] 150 / 9e-42 AT5G62380 61 / 5e-10 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Lus10010294 [exp] 90 / 2e-19 AT5G46590 59 / 1e-09 NAC domain containing protein 96 (.1) Lus10001309 [exp] 86 / 7e-19 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G028700 [exp] 77 / 2e-15 AT2G24430 65 / 1e-11 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.019G063000 [exp] 71 / 3e-14 AT1G79580 56 / 4e-09 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.016G027900 [exp] 73 / 5e-14 AT2G24430 66 / 8e-12 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.015G002900 [exp] 69 / 2e-12 AT1G71930 71 / 2e-13 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Potri.006G028300 [exp] 67 / 5e-12 AT3G10480 74 / 5e-14 NAC domain containing protein 50 (.1.2.3) Potri.006G029200 [exp] 62 / 9e-11 AT3G10480 67 / 8e-13 NAC domain containing protein 50 (.1.2.3) Potri.014G163600 [exp] 57 / 8e-09 AT5G62380 58 / 3e-09 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.006G028900 [exp] 55 / 2e-08 AT3G10480 71 / 8e-14 NAC domain containing protein 50 (.1.2.3) Potri.017G058100 [exp] 55 / 4e-08 AT5G62380 49 / 4e-06 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.006G231300 [exp] 54 / 7e-08 AT5G62380 61 / 5e-10 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10007204 pacid=23167607 polypeptide=Lus10007204 locus=Lus10007204.g ID=Lus10007204.BGIv1.0 annot-version=v1.0 ATGGGGCCAAACCACCAATCATCCGAGACCGTAGATCTACTACCTGTTGGTTGCTGCTTCAAGCCAACAGAGAAGCAACTGGTAAGCCACTATCTCTTCA ATCATATTTCCGGATTGCCCTTGCAAAACCACCCGTTTTGCCCTGTTCCGGTTTTCTTCGGTGATCTGTATGGTTCTGAGGAACCATGGGAACTTTGGCA CCGATTCCAATCCCAAAACAATTCTGGCCTTTCCACTGGCGATGATGTCTATTTGATCACAAAACTGAAGCAGAAGGTGTCTGGAAAACAATTGAAGCAG AAGAAGAAGATGGCTGGTAGCAGTAATAAACAGTACTATGATCGATTGGTGGGAACCAGTGGGGGTAACTGGGATCGCTCTGATAAAGATTATGAAATTG AGGTTGATAGGGATGATTTTGTCGGGATTCGTAAGAAATTCTCTTACAAAAATCGCGAATCCAAGCAACATGGGTTATGGCTCTTCTCAGAGTACTCGAT TAGTTATGATGGTGGGAAGACTTGCTCTGAAGATGTTATATGCATCCTCAAGGACCATAGAAAATCTGATGAATCAGCCACTACCAAAAAGAGAAAGTTC GAACAAGTTCCTAAGCTTGATGATGGTGCCACAATCTCTGCTACCCTAATGCAGATGCAGACAGAAGAGATGGTGCCTATCTCTTTTGATTTCTCAATGC CATCTCCCCCAAACGTTCTAGACGGTTCTTCTGTGGGTGACATAATTCACAACAACGAGCTACTGCCCACAATTCCATCTCACCACTCGGTGGATGACAG ATCAGGATCCGAGAGTGGACAACTTGATATCGATGACATCTACATTGATGACGATTCAATTTGGGCACTCCTTGAGGATGACAAGGAAGAGCCTGAAAAT AGTGGACTGCTTGAGCAAGTTCAATCATCCATCATCAAACCAGTTCATCAGGGTCCTCTTGATCTTGATCTCCCTGTTACAAGTTTCTCCTCTAATCCCT CTGATATGTTCCTTGATGGTGAATTCCTTCAGCGTATTTCGAGCCCCAGTTACATTCCTTGCTCCCTTGCTTCCGATTTCGTTCTTGAAATTGATCCATT TTCTGATTTTCCTGACTCTTTCCAGTTTTAG
AA sequence Show only first row Show all	>Lus10007204 pacid=23167607 polypeptide=Lus10007204 locus=Lus10007204.g ID=Lus10007204.BGIv1.0 annot-version=v1.0 MGPNHQSSETVDLLPVGCCFKPTEKQLVSHYLFNHISGLPLQNHPFCPVPVFFGDLYGSEEPWELWHRFQSQNNSGLSTGDDVYLITKLKQKVSGKQLKQ KKKMAGSSNKQYYDRLVGTSGGNWDRSDKDYEIEVDRDDFVGIRKKFSYKNRESKQHGLWLFSEYSISYDGGKTCSEDVICILKDHRKSDESATTKKRKF EQVPKLDDGATISATLMQMQTEEMVPISFDFSMPSPPNVLDGSSVGDIIHNNELLPTIPSHHSVDDRSGSESGQLDIDDIYIDDDSIWALLEDDKEEPEN SGLLEQVQSSIIKPVHQGPLDLDLPVTSFSSNPSDMFLDGEFLQRISSPSYIPCSLASDFVLEIDPFSDFPDSFQF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10007204 [exp]	0	1
AT1G58230			binding (.1)		Lus10042867 [exp]	2.2	0.9761
					Lus10034708 [exp]	3.2	0.9568
ATMG01360		ATMG01360.1, CO...	cytochrome oxidase (.1)		Lus10004084 [exp]	5.7	0.9607
					Lus10008200 [exp]	5.9	0.9599
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10040892 [exp]	6.8	0.9645
ATMG00510		ATMG00510.1, NA...	NADH dehydrogenase subunit 7 (...		Lus10000460 [exp]	8.5	0.9597
AT2G28290		CHR3, SYD	SPLAYED, CHROMATIN REMODELING ...		Lus10033980 [exp]	8.5	0.9600
ATMG01360		ATMG01360.1, CO...	cytochrome oxidase (.1)		Lus10009204 [exp]	9.5	0.9596
AT1G65780			P-loop containing nucleoside t...		Lus10013768 [exp]	9.7	0.9033
					Lus10019221 [exp]	10.0	0.9019

Compare expression of checked genes

Lus10007204 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.