Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01630 370 / 2e-130 ATEXP17, ATHEXPALPHA1.13, ATEXPA17 EXPANSIN 17, expansin A17 (.1) AT1G20190 285 / 4e-97 ATHEXPALPHA1.14, ATEXP11, ATEXPA11 EXPANSIN 11, expansin 11 (.1) AT5G05290 283 / 3e-96 ATHEXPALPHA1.12, ATEXP2, ATEXPA2 EXPANSIN 2, expansin A2 (.1) AT2G39700 275 / 5e-93 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1) AT2G40610 272 / 4e-92 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1) AT5G02260 269 / 1e-90 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1) AT2G03090 268 / 2e-90 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1) AT3G55500 268 / 3e-90 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1) AT2G28950 266 / 8e-90 ATHEXPALPHA1.8, ATEXP6, ATEXPA6 ARABIDOPSIS THALIANA TEXPANSIN 6, expansin A6 (.1) AT1G69530 264 / 1e-88 ATHEXPALPHA1.2, AT-EXP1, ATEXP1, ATEXPA1, EXP1 EXPANSIN 1, expansin A1 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009253 [exp] 406 / 8e-145 AT4G01630 405 / 1e-144 EXPANSIN 17, expansin A17 (.1) Lus10038013 [exp] 404 / 4e-144 AT4G01630 405 / 1e-144 EXPANSIN 17, expansin A17 (.1) Lus10034548 [exp] 314 / 2e-108 AT1G20190 400 / 1e-142 EXPANSIN 11, expansin 11 (.1) Lus10021845 [exp] 310 / 6e-107 AT1G20190 397 / 1e-141 EXPANSIN 11, expansin 11 (.1) Lus10017256 [exp] 299 / 2e-102 AT1G20190 378 / 5e-134 EXPANSIN 11, expansin 11 (.1) Lus10023407 [exp] 283 / 5e-96 AT2G39700 445 / 3e-160 expansin A4 (.1) Lus10040286 [exp] 281 / 2e-95 AT2G39700 447 / 4e-161 expansin A4 (.1) Lus10034227 [exp] 278 / 3e-94 AT2G40610 416 / 7e-149 expansin A8 (.1) Lus10033011 [exp] 276 / 2e-93 AT3G29030 389 / 2e-138 ARABIDOPSIS THALIANA EXPANSIN A5, ARABIDOPSIS THALIANA EXPANSIN 5, expansin A5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G184700 [exp] 390 / 9e-139 AT4G01630 394 / 4e-140 EXPANSIN 17, expansin A17 (.1) Potri.005G244100 [exp] 297 / 5e-102 AT1G20190 404 / 3e-144 EXPANSIN 11, expansin 11 (.1) Potri.002G017900 [exp] 293 / 4e-100 AT1G20190 408 / 9e-146 EXPANSIN 11, expansin 11 (.1) Potri.008G057100 [exp] 288 / 4e-98 AT2G39700 459 / 6e-166 expansin A4 (.1) Potri.016G135200 [exp] 285 / 7e-97 AT2G40610 400 / 6e-143 expansin A8 (.1) Potri.006G108000 [exp] 284 / 8e-97 AT2G40610 379 / 2e-134 expansin A8 (.1) Potri.009G031800 [exp] 283 / 3e-96 AT2G39700 453 / 1e-163 expansin A4 (.1) Potri.010G202500 [exp] 283 / 4e-96 AT2G39700 473 / 2e-171 expansin A4 (.1) Potri.001G240900 [exp] 280 / 8e-95 AT2G39700 449 / 6e-162 expansin A4 (.1) Potri.019G057500 [exp] 276 / 1e-93 AT2G40610 374 / 2e-132 expansin A8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF01357 [flax] [poplar] Expansin_C Expansin C-terminal domain CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10007205 pacid=23167597 polypeptide=Lus10007205 locus=Lus10007205.g ID=Lus10007205.BGIv1.0 annot-version=v1.0 ATGGTGTCTACTAGGGCTTTCAAGATCACGAGCAGCAATACAGCAATATTGCCTCTAGTACCATTGCTGCTGCTGACCATTTGGATAACTGGTAGCTTCC AAACAGCCTCAGCAGCTTGGCTCCGAGCCCATGCAACCTTCTACGGTGGAAGCGACGCTTTCGACACTATGGGAGGAGCTTGCGGGTATGGAAATCTATA CACGGACGGGTACGGAGTGAAGACAGCAGCGCTAAGCACGGCGCTATTCAACGATGGCAAGTCATGCGGCGGCTGCTACCAGATTGTTTGTGACGGCACC AAGGTGCCACAATGGTGCAGAAGGGGAACTTCCATCACAATCACGGCTACAAACTTGTGCCCACCAAACTACAATCTTCCCAACGACAATGGAGGATGGT GCAATCCTCCCCGCCCGCATTTCGACATGTCCCAACCCGCATTTCTCGCCATTGCTCAGTATAAGGCCGGCATCGTCCCCGTTCTCTACCGTAGGGTGAG GTGCAGGAGAAGTGGAGGGATGAGGTTTACAATGAACGGGAGGGATTATTTCGAGTTGGTGATGATATCGAACGTGGGAGGAGTCGGAGAGATATCGAGG GTTTGGATCAAAGGCTCGAGAACAAATAAGTGGGAGTCGATGTCGAGGAATTGGGGTTCCAACTGGCAGAGTCTAACTTTCTTCAGAGGGCAGTCTTTAT CTTTCAGAATTCAATCTGGAAACGGTGGGATCCGTACTGCTCTCAATATTGTCCCTTCCAATTGGCGCTTTGGACAGTCTTTCAAATCCAGACTTCAATT TTAA
AA sequence Show only first row Show all	>Lus10007205 pacid=23167597 polypeptide=Lus10007205 locus=Lus10007205.g ID=Lus10007205.BGIv1.0 annot-version=v1.0 MVSTRAFKITSSNTAILPLVPLLLLTIWITGSFQTASAAWLRAHATFYGGSDAFDTMGGACGYGNLYTDGYGVKTAALSTALFNDGKSCGGCYQIVCDGT KVPQWCRRGTSITITATNLCPPNYNLPNDNGGWCNPPRPHFDMSQPAFLAIAQYKAGIVPVLYRRVRCRRSGGMRFTMNGRDYFELVMISNVGGVGEISR VWIKGSRTNKWESMSRNWGSNWQSLTFFRGQSLSFRIQSGNGGIRTALNIVPSNWRFGQSFKSRLQF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01630		ATEXP17, ATHEXP...	EXPANSIN 17, expansin A17 (.1)		Lus10007205 [exp]	0	1
AT1G48130		ATPER1	1-cysteine peroxiredoxin 1 (.1...		Lus10018342 [exp]	2.0	0.8353
AT3G47570			Leucine-rich repeat protein ki...		Lus10031043 [exp]	103.2	0.7618
AT2G36800		UGT73C5, DOGT1	UDP-GLUCOSYL TRANSFERASE 73C5,...		Lus10022627 [exp]	143.5	0.7718
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10010701 [exp]	206.4	0.7573

Compare expression of checked genes

Lus10007205 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.