Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02130 910 / 0 TOAD2, RPK2, CLI1 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) AT1G69270 449 / 6e-146 RPK1 receptor-like protein kinase 1 (.1) AT1G73080 404 / 3e-122 ATPEPR1, PEPR1 PEP1 receptor 1 (.1) AT4G20140 403 / 3e-121 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G65700 377 / 2e-113 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT1G75820 369 / 9e-111 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT2G01950 340 / 4e-99 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) AT4G20270 330 / 1e-96 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) AT1G08590 321 / 3e-93 Leucine-rich receptor-like protein kinase family protein (.1) AT5G62230 318 / 9e-93 ERL1 ERECTA-like 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010087 [exp] 2073 / 0 AT3G02130 962 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10031976 [exp] 527 / 5e-174 AT3G02130 531 / 2e-175 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10037083 [exp] 493 / 3e-161 AT3G02130 569 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10036899 [exp] 489 / 6e-160 AT3G02130 559 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10026666 [exp] 484 / 9e-158 AT3G02130 555 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10004646 [exp] 477 / 3e-155 AT3G02130 552 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10035126 [exp] 437 / 3e-137 AT3G02130 450 / 4e-142 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10039030 [exp] 391 / 2e-117 AT1G73080 1095 / 0.0 PEP1 receptor 1 (.1) Lus10039641 [exp] 382 / 6e-115 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G094400 [exp] 953 / 0 AT3G02130 1405 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Potri.004G120500 [exp] 951 / 0 AT3G02130 1375 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Potri.014G144600 [exp] 770 / 0 AT3G02130 785 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Potri.008G096400 [exp] 491 / 8e-155 AT3G02130 1140 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Potri.005G198000 [exp] 394 / 4e-119 AT1G34110 1381 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G075000 [exp] 396 / 1e-118 AT4G20140 1371 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.008G007600 [exp] 387 / 5e-117 AT1G73080 981 / 0.0 PEP1 receptor 1 (.1) Potri.005G241500 [exp] 380 / 8e-115 AT1G75820 1268 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.015G080800 [exp] 380 / 1e-113 AT5G56040 1019 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.011G139700 [exp] 379 / 2e-113 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10007206 pacid=23167605 polypeptide=Lus10007206 locus=Lus10007206.g ID=Lus10007206.BGIv1.0 annot-version=v1.0 ATGCCTCCGGATCATCTCCGCCACATCCGGTGGTCAGGGAACTCCCCGCATCCACTCTCCTTCTCATCCGCCGCCGTTCTGGCTGTTCTCTTGTGCTCTT CCTTTGCCTTGGCCGACGACAAACATGCATTGCTAGACTTCAAATCTGCTCTTACTCGAGACCCCTTAGGGCTTACCTCCACCTGGGACCCTAACGATCC CGATGCTTGCTCCTGGCACGGCGTTACCTGCGACTCGGTCTCTCGTCGAGTTACTGCTCTTCGGCTTTCTCCTCCAACTGACTCCGTAGCCTGCTCTTTG TTCTCTGTCTCTGCGGCGAATGGTAACTTCTCTTTGCTCTTTCCTTGTTTAGGATTTAACCTAGATGCTCTCCCCAAATTGGAAGGCAAATTGTCGCCTA AGATTGCCCAGCTCTCTCAGCTTAGGATTCTGTCTCTTTCGTTTAACGGTTTGTCCGGAGAGTTGCCAGTGGAGATTGGACTAATTCAGTCGTTGGAAGT GCTTGACTTGGGGTTTAATGCATTTCACGGCTCTATACCCTTCTCCCTCAAGAATTTTGCCTCCTTGCGTGTTATTAATCTGTCCGGGAATCAGTTGAAT GGTACAATTCCGGCATTCTTTAGGCAATTGAGGGACGCGCGAGTCGTTGCGTTGTCGTTTAATTTGTTGAGTGGTTCCATCCCCACTGATTTAGGAGACA ATTGTGGTAGCATGGAGCATCTGTTTCTGAATGGAAACTCTCTTTCTGGCTCGATTCCTCCGAATCTTGGAGGTTGCAAAGAGCTACGCTCGTTAGTACT GTCTTCAAACTTGTTGCAAGATGATGTTCCTTCAACTCTTGGTACGTTAGCAAATCTGGAAGTGCTTGATCTATCCAGGAACTTCCTAAGTGGGAACATC CCTCCAGAGTTGGGGAACTGTGTGCAGTTAAAGTTGCTTGTACTGAAAAATACTTATGGCCTTCTCTGGTCAAGGAGTCCTGCAAGTTCAAATAGTGATG AAGACGAACGCGGAGAAGGGGAGTTCAACTACTTCGACGGAAACTTGCCTGATAGCATCTTAAAGCTCCCTAATCTCCATGTGCTTTGGGCACCAAACTT GAATCTGGAAGGGAGTTTTCCACAAATTATGGGTCCTTCTTGCAACTTGAAGATGCTCAATTTGGCAGGGAATTATTTTGTGGGAGAAATACCAGTGTCC CTTGGTAATTGCAACAGCTTGACGTTTCTAGATTTGAGCTCGAACAACTTTACTGGGCCAGTTCCGCTGGAGTTTTCTGTCCCTTGTATGGTTGTCTTCA ATGTTAGTCACAACTCTTTATCTGGGGATATTCCAAGATTTTCTAGTAGCCAATGCTCAAATGTGTCCATAGAGATGTTTAGTTCACGTGAAGGAGCGCT TGGTTTCTACTCATCCTTCTTTTATGCCAATGCTGTTATGGGAATCACCTCTTTTGCTTTTCCTTCAAGTGCTTTGGCTGTCTTGCATGATTTGAGCAAC AATCTTTTCACTGGTTCAGTTCCTGCTTTGTTCGTTGCCTCAGAAAGCTTTTCTCGTAAAGCTTTCTACGGATTTTGGCTGGCTGGTAACTACCTTAGCG GAAATATTACTACTTACTCTTTTGACCCATGCTCTAATTTAGATGGCCTGGTTTTTGACATTGGGGAGAATAGAGTTGATGGTGAACTGCCTTCAGCCAT GGGAAGAAAATGTAAATGCCTTAAATCTCTCAGTTTGGCAGTGAACAGTTTAAATGGCTCAGTTCCTCAGAGTTTCACATATCTAGATTCTCTGGTGAAC CTTAATCTCAGCAGTAACGGACTGCAAGGATCTATTCCATCCTTTTTTCGGCAGATGAAAGGTTTGAAAGTTCTCTCAGTGTCTAGCAATCGTTTTACAG GGGTTATACCATTGGAACTGGCTCAGCTGTCTTCACTAGAGGTTTTGGATCTCTCATCAAATTCTTTGTCTGGCGAGATACCTCCTTACCTTTCAAAACT TGAACATCTGAATGTTCTGCGTTTAGGTCACAATCATCTTACTGGAAAAATACCATCTGGCTTCATGAACTCTTCTCTTTTGGTACTTGATGTCTCCTTC AATAATTACAACTTCTCTTCTGGTCCTCTTCCTCTAAATTCAAACTTGGTCAAGTGTGACAACTTCCGAGGAAATCCTGATCTCGAGCCATGTAAAGATG ACTCACCAGCCTCTGAATGGGAGCAGCAGCATTCTGGTAATGTCTCTCAGCAACAGGCTAATAGTCCCTCTGGAAGTAATCCGAAGAATAGCAATGGTCT GACTCAAATTGAACTTGCCGCCGTCACATCAGCTGCTATCATTGTCTCTGTTCTTATTATGTTAAGTATTTTGTGCATATGCATGAGGAAGTTTGCTTTC TGTTCCACTTCTGGCAACGGTTCAGGTCTGAAGGAGGTTATAACCTGTAATGACATAGGTGTGCAGTTGACATATGAAAACGTTGTAAGGGCTACTGGGG GTTTCAATATTCAGTATTGCATTGGAAGTGGAGGGTTTGGAGCAACATACAAAGCTCAGATTGTTCCTGGCGTTATGGTGGCAGTGAAGCGGCTGTCAAT TGGGAGATTCCAAGGATCCCAGCAATTTGGGGCTGAGATTCGAACGCTTGGAAGGATCCAGCATCCACACCTTGTGAAGCTGATAGGCTATCATGTTAGT GAGTCTGAAATGTTTCTTATATACAATTACTTGCCTGGAGGCAATCTTGAAAAGTTCATCCAGGAGAGGTCAATGAGAGCTGTTGAGTGGAGCATGCTTC ACAAGATTGCTCTTGATATTGCCCGCGCACTTGCTTATTTACATGATGAGTGTGTACCTAGGGTACTGCATCGTGACATCAAGCCAAGCAACATATTGCT CGACAATAAATTTAATGCATATCTCTCTGATTTTGGTCTTGCTAGACTCCTCGGCACTTCCGAGACCCATGCTACTACTGATGTGGCTGGGACTTTTGGA TATGTTGCTCCGGAGTATGCAATGACGTGTCGTGTCTCTGACAAGGCTGATGTATACAGCTACGGTGTTGTTCTTCTAGAATTGATATCTGACAAGAAAG TCCTGGATCCCTCATTCTCGTCATTTGGTAATGGCTTTAACATTGTCGCGTGGGCATGCATGCTTCTGCGGCAGGGCCGAGCCTCTGAATTTTTCATGGC TGGCCTGTGGGATTCTGGACCTCATGATGACCTCATTGACATACTTCACTTAGGAGCTATGTGTACATGTGAGTCTTTTTCATCTAGACCTTCCATGAGA CAAGTGGCCCAGCGTTTAAGAAGGATTCAGCCTCCACCGATTCAGCCTCCACCTTCATAA
AA sequence Show only first row Show all	>Lus10007206 pacid=23167605 polypeptide=Lus10007206 locus=Lus10007206.g ID=Lus10007206.BGIv1.0 annot-version=v1.0 MPPDHLRHIRWSGNSPHPLSFSSAAVLAVLLCSSFALADDKHALLDFKSALTRDPLGLTSTWDPNDPDACSWHGVTCDSVSRRVTALRLSPPTDSVACSL FSVSAANGNFSLLFPCLGFNLDALPKLEGKLSPKIAQLSQLRILSLSFNGLSGELPVEIGLIQSLEVLDLGFNAFHGSIPFSLKNFASLRVINLSGNQLN GTIPAFFRQLRDARVVALSFNLLSGSIPTDLGDNCGSMEHLFLNGNSLSGSIPPNLGGCKELRSLVLSSNLLQDDVPSTLGTLANLEVLDLSRNFLSGNI PPELGNCVQLKLLVLKNTYGLLWSRSPASSNSDEDERGEGEFNYFDGNLPDSILKLPNLHVLWAPNLNLEGSFPQIMGPSCNLKMLNLAGNYFVGEIPVS LGNCNSLTFLDLSSNNFTGPVPLEFSVPCMVVFNVSHNSLSGDIPRFSSSQCSNVSIEMFSSREGALGFYSSFFYANAVMGITSFAFPSSALAVLHDLSN NLFTGSVPALFVASESFSRKAFYGFWLAGNYLSGNITTYSFDPCSNLDGLVFDIGENRVDGELPSAMGRKCKCLKSLSLAVNSLNGSVPQSFTYLDSLVN LNLSSNGLQGSIPSFFRQMKGLKVLSVSSNRFTGVIPLELAQLSSLEVLDLSSNSLSGEIPPYLSKLEHLNVLRLGHNHLTGKIPSGFMNSSLLVLDVSF NNYNFSSGPLPLNSNLVKCDNFRGNPDLEPCKDDSPASEWEQQHSGNVSQQQANSPSGSNPKNSNGLTQIELAAVTSAAIIVSVLIMLSILCICMRKFAF CSTSGNGSGLKEVITCNDIGVQLTYENVVRATGGFNIQYCIGSGGFGATYKAQIVPGVMVAVKRLSIGRFQGSQQFGAEIRTLGRIQHPHLVKLIGYHVS ESEMFLIYNYLPGGNLEKFIQERSMRAVEWSMLHKIALDIARALAYLHDECVPRVLHRDIKPSNILLDNKFNAYLSDFGLARLLGTSETHATTDVAGTFG YVAPEYAMTCRVSDKADVYSYGVVLLELISDKKVLDPSFSSFGNGFNIVAWACMLLRQGRASEFFMAGLWDSGPHDDLIDILHLGAMCTCESFSSRPSMR QVAQRLRRIQPPPIQPPPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10007206 [exp]	0	1
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10010087 [exp]	1.4	0.9525
AT1G29350			Kinase-related protein of unkn...		Lus10025382 [exp]	3.3	0.9341
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Lus10013411 [exp]	3.5	0.9494
AT3G08960			ARM repeat superfamily protein...		Lus10004753 [exp]	3.9	0.9450
AT1G63020		SMD2, PolIVa, S...	SILENCING MOVEMENT DEFICIENT 2...		Lus10002955 [exp]	4.4	0.9282
AT4G35800		RNA_POL_II_LSRN...	RNA polymerase II large subuni...		Lus10041856 [exp]	5.3	0.9540
					Lus10021651 [exp]	5.3	0.9461
AT4G04970		ATGSL01, ATGSL1	GLUCAN SYNTHASE LIKE-1, GLUCAN...		Lus10032069 [exp]	7.3	0.9091
AT3G61690			nucleotidyltransferases (.1)		Lus10004019 [exp]	8.5	0.9345
AT3G24870			Helicase/SANT-associated, DNA ...		Lus10022788 [exp]	9.2	0.9447

Compare expression of checked genes

Lus10007206 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.