Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16260 77 / 1e-17 Glycosyl hydrolase superfamily protein (.1) AT3G57270 69 / 2e-14 BG1 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) AT3G57240 66 / 2e-13 BG3 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) AT3G57260 65 / 5e-13 AtPR2, PR-2, PR2, BG2, BGL2 PATHOGENESIS-RELATED PROTEIN 2, "beta-1,3-glucanase 2", beta-1,3-glucanase 2 (.1) AT3G07320 64 / 2e-12 O-Glycosyl hydrolases family 17 protein (.1) AT5G56590 57 / 3e-10 O-Glycosyl hydrolases family 17 protein (.1) AT2G05790 55 / 2e-09 O-Glycosyl hydrolases family 17 protein (.1) AT4G26830 54 / 6e-09 O-Glycosyl hydrolases family 17 protein (.1) AT4G18340 53 / 8e-09 Glycosyl hydrolase superfamily protein (.1) AT2G16230 52 / 2e-08 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010091 [exp] 172 / 4e-51 AT1G02305 520 / 0.0 Cysteine proteinases superfamily protein (.1) Lus10014110 [exp] 82 / 3e-19 AT3G57270 359 / 2e-124 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10027860 [exp] 80 / 2e-18 AT3G57260 322 / 4e-109 PATHOGENESIS-RELATED PROTEIN 2, "beta-1,3-glucanase 2", beta-1,3-glucanase 2 (.1) Lus10014108 [exp] 79 / 6e-18 AT3G57270 366 / 3e-123 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10002807 [exp] 75 / 1e-16 AT3G57240 339 / 7e-116 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) Lus10031037 [exp] 75 / 2e-16 AT3G57240 312 / 3e-105 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) Lus10039233 [exp] 71 / 4e-15 AT4G16260 258 / 5e-84 Glycosyl hydrolase superfamily protein (.1) Lus10019801 [exp] 70 / 1e-14 AT3G57270 367 / 6e-127 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10027479 [exp] 67 / 7e-14 AT4G16260 216 / 8e-69 Glycosyl hydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G255100 [exp] 98 / 5e-25 AT4G16260 369 / 9e-128 Glycosyl hydrolase superfamily protein (.1) Potri.009G050300 [exp] 84 / 4e-20 AT4G16260 285 / 5e-95 Glycosyl hydrolase superfamily protein (.1) Potri.010G142800 [exp] 81 / 8e-19 AT4G16260 433 / 2e-152 Glycosyl hydrolase superfamily protein (.1) Potri.010G143166 [exp] 78 / 7e-18 AT4G16260 432 / 5e-153 Glycosyl hydrolase superfamily protein (.1) Potri.006G046100 [exp] 74 / 3e-16 AT3G57270 370 / 4e-128 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.016G057600 [exp] 66 / 3e-13 AT3G57270 414 / 2e-145 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.006G048100 [exp] 62 / 4e-12 AT3G57270 382 / 6e-133 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.002G247900 [exp] 59 / 1e-10 AT3G07320 653 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.016G057400 [exp] 58 / 2e-10 AT3G57270 416 / 4e-146 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.004G153800 [exp] 53 / 9e-09 AT4G34480 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Lus10007208 pacid=23167580 polypeptide=Lus10007208 locus=Lus10007208.g ID=Lus10007208.BGIv1.0 annot-version=v1.0 ATGGCCCTGCAAGCACTAAAGGGAAATAACATTCAACTCGTCCTAGACGTCCCCAACAGAGTCATCCCATCATTAATATCTGATGCCACTGTCGGGGTCC ACACCAACATCTTGTCCTACTACCCTGCCGTCCAATTCCGCTACATTGTCGTGGGGAACGAGATCGGCCCCGACGACCCTATTGCTCCTAGCATCCTCCC GGCTCTGACCAACATCAACAACATCCTTGCCGCCAACAATGCTGGCAGTGTGAAGGGGTCGACTACGATCAAATTGGTCTTGTTGGGAACATCATACCCA CCCTCGGCTGGGGCATTAGCAGACAGTTCATCATCATTTATCATACCAATCGTGCAATACTTGGCAAACAACAACGCACCGTTACTTGCTAACGTGTATC GGTTTTTCGCTTATATAGGAAATTCGGGACGTTGA
AA sequence Show only first row Show all	>Lus10007208 pacid=23167580 polypeptide=Lus10007208 locus=Lus10007208.g ID=Lus10007208.BGIv1.0 annot-version=v1.0 MALQALKGNNIQLVLDVPNRVIPSLISDATVGVHTNILSYYPAVQFRYIVVGNEIGPDDPIAPSILPALTNINNILAANNAGSVKGSTTIKLVLLGTSYP PSAGALADSSSSFIIPIVQYLANNNAPLLANVYRFFAYIGNSGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10007208 [exp]	0	1
AT1G30670	bHLH	bHLH052	basic helix-loop-helix (bHLH) ...		Lus10005451 [exp]	1.4	0.9735
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Lus10011472 [exp]	2.0	0.9559
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10020559 [exp]	4.0	0.8968
AT2G32350			Ubiquitin-like superfamily pro...		Lus10039679 [exp]	5.2	0.9093
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10041151 [exp]	7.5	0.8515
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Lus10018011 [exp]	9.5	0.8942
					Lus10033149 [exp]	10.7	0.8776
AT3G16180			Major facilitator superfamily ...		Lus10009506 [exp]	11.5	0.8776
AT1G58060			RNA helicase family protein (....		Lus10012695 [exp]	11.7	0.7521
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10023215 [exp]	12.3	0.8776

Compare expression of checked genes

Lus10007208 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.