Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27680 715 / 0 APL2 ADPGLC-PPase large subunit (.1) AT5G19220 676 / 0 ADG2, APL1 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) AT4G39210 669 / 0 APL3 Glucose-1-phosphate adenylyltransferase family protein (.1) AT2G21590 645 / 0 APL4 Glucose-1-phosphate adenylyltransferase family protein (.1.2) AT5G48300 496 / 5e-172 APS1, ADG1 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) AT1G05610 321 / 2e-104 APS2 ADP-glucose pyrophosphorylase small subunit 2 (.1) AT2G39770 46 / 3e-05 VTC1, SOZ1, GMP1, EMB101, CYT1 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010088 [exp] 1033 / 0 AT1G27680 697 / 0.0 ADPGLC-PPase large subunit (.1) Lus10034053 [exp] 667 / 0 AT5G19220 832 / 0.0 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) Lus10010515 [exp] 655 / 0 AT5G19220 827 / 0.0 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) Lus10023553 [exp] 649 / 0 AT4G39210 730 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1) Lus10040437 [exp] 613 / 0 AT4G39210 697 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1) Lus10025187 [exp] 493 / 5e-171 AT5G48300 895 / 0.0 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) Lus10016069 [exp] 492 / 1e-170 AT5G48300 895 / 0.0 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) Lus10042456 [exp] 313 / 5e-101 AT1G05610 504 / 4e-176 ADP-glucose pyrophosphorylase small subunit 2 (.1) Lus10026213 [exp] 267 / 2e-83 AT1G05610 437 / 1e-150 ADP-glucose pyrophosphorylase small subunit 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G110000 [exp] 814 / 0 AT1G27680 737 / 0.0 ADPGLC-PPase large subunit (.1) Potri.002G033400 [exp] 746 / 0 AT1G27680 822 / 0.0 ADPGLC-PPase large subunit (.1) Potri.005G229700 [exp] 735 / 0 AT1G27680 810 / 0.0 ADPGLC-PPase large subunit (.1) Potri.004G157100 [exp] 687 / 0 AT4G39210 808 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1) Potri.009G118800 [exp] 681 / 0 AT4G39210 808 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1) Potri.008G195100 [exp] 663 / 0 AT5G19220 801 / 0.0 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) Potri.014G171800 [exp] 492 / 2e-170 AT5G48300 885 / 0.0 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) Potri.017G001700 [exp] 347 / 6e-114 AT1G05610 532 / 0.0 ADP-glucose pyrophosphorylase small subunit 2 (.1) Potri.007G146100 [exp] 342 / 2e-112 AT1G05610 529 / 0.0 ADP-glucose pyrophosphorylase small subunit 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF00483 [flax] [poplar] NTP_transferase Nucleotidyl transferase
Representative CDS sequence Show only first row Show all	>Lus10007209 pacid=23167592 polypeptide=Lus10007209 locus=Lus10007209.g ID=Lus10007209.BGIv1.0 annot-version=v1.0 ATGGTGGTGGCAGAGTTGCAAAGATGCATGTTTTCTTCAGCAAGTGACACCAGCAACATTATCAACGGTCGTAAAGTGGGTTCAAGGAGTTATCCTAGGA CCTCAATTCCCGGCACTCAGTTGGGGAAAAAGGCTAACAACTTGCTCAAGAAGTTGTCCCATCACAGCAACAATGGCAGGCGCTTTCTCAAAGTCTCTGT TGTTGCTACTGATGTTACTAGAGAGTTTAAGGCACCAACTGTTGAGCAGCCTCAAGCAGATCCAAAACTTGTAGCTTCTATAATTTTAGGAGGTGGAGCT GGAACCAGGCTTTTCCCTCTGACTAGAAGAAGGGCTAAACCAGCTGTGCCGATTGGAGGGTGTTATAGGCTTATTGATGTTCCCATGAGTAACTGCATAA ACAGTGGGATCAACAAGATTTACATCTTAACTCAGTTCAACTCTCAATCTCTCAATCGCCACATCGCTAGAACATACAACTCTGCAAATGGTGTGAATTT TGGCAATGGGTTTGTGGAGGTTTTGGCGGCGACACAAACACCTGGTGAATATGGGAAGAGGTGGTTTCAAGGCACAGCAGATGCTGTCAGACAATTTATC TGGTTATTTGAGGATGCAAAGTTAAGACATATTGAGAATATTCTAATTCTATCTGGTGATCACATCTATCGGATGGACTACATGGACTTTGTGCAGAAGC ATCTGGATACTGGCGCTGATATATCTGTCTCCTGCATACCTGTTGATGGAAGCCGTGCCTCAGATTTCGGATTGATAAAGATAAATGAAACTGGAAGAAT AAATCAGTTTCTTGAGAAGCCTAAGGGAGATGCTTTGAAATCTATGACAGTGGATACAACCATCCTAGGATTATCAGCTCAGGAGGCAAAGAAGTTCCCT CATATTGCATCAATGGGTGTTTATGTGTTCAAGACAGATGCGTTACTGAAACTTCTCAGGTTACAGTACCCGACGGCCAATGACTTTGGATCAGAAATCC TTCCAAGGTCTCTTAAGCATTACAATGTCCAGGCATATTTATTCAACGGATATTGGGAAGATATTGGAACCATAAGATCTTTCTTTGATGCCAACTTGGC ACTAACAGAACAGAACCCCAATTTTCAGTTCTCCAATCCAATGAAGCCAATTTTTACTTGTCCCATGTTTCTGCCACCAACCAAAATTGAGAAGTGCCAG GTTAAGAACTCCATTATTTCCCACGGTTGCTTCTTGAACGAGTGCAGTGTTGAACATTCCATCGTTGGGATTCGCTCGAGACTAGAGTATGGAGTTGAGC TCAAGGATACTATGATGATGGGGGCTGATTACTACCAAACTGAGGCGGAGATAGTAGCCGAACTAGCCGAAGGAAAAGTTCCAGTCGGTGTTGGTAGAGA TACCAAGATCAAGAACTGTATCATCGATAAGAATGCTAGGATCGGTCGTAATGTGGTGATAGCAAACAAGGATAAGGTGGAAGAGGCAGAGAGGGCATCG GAAGGATTTTACATCAGATCAGGAATCACAGTTGTAATGAAAAACTGCACGATTAAAGATGGTACGGTCATATAA
AA sequence Show only first row Show all	>Lus10007209 pacid=23167592 polypeptide=Lus10007209 locus=Lus10007209.g ID=Lus10007209.BGIv1.0 annot-version=v1.0 MVVAELQRCMFSSASDTSNIINGRKVGSRSYPRTSIPGTQLGKKANNLLKKLSHHSNNGRRFLKVSVVATDVTREFKAPTVEQPQADPKLVASIILGGGA GTRLFPLTRRRAKPAVPIGGCYRLIDVPMSNCINSGINKIYILTQFNSQSLNRHIARTYNSANGVNFGNGFVEVLAATQTPGEYGKRWFQGTADAVRQFI WLFEDAKLRHIENILILSGDHIYRMDYMDFVQKHLDTGADISVSCIPVDGSRASDFGLIKINETGRINQFLEKPKGDALKSMTVDTTILGLSAQEAKKFP HIASMGVYVFKTDALLKLLRLQYPTANDFGSEILPRSLKHYNVQAYLFNGYWEDIGTIRSFFDANLALTEQNPNFQFSNPMKPIFTCPMFLPPTKIEKCQ VKNSIISHGCFLNECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIVAELAEGKVPVGVGRDTKIKNCIIDKNARIGRNVVIANKDKVEEAERAS EGFYIRSGITVVMKNCTIKDGTVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27680		APL2	ADPGLC-PPase large subunit (.1...		Lus10007209 [exp]	0	1
AT1G69550			disease resistance protein (TI...		Lus10018308 [exp]	4.2	0.7768
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10018380 [exp]	6.2	0.7714
AT2G27410	B3		Domain of unknown function (DU...		Lus10000815 [exp]	6.9	0.6765
AT5G03795			Exostosin family protein (.1)		Lus10039142 [exp]	9.5	0.7197
AT2G42940	AT-hook		Predicted AT-hook DNA-binding ...		Lus10020763 [exp]	9.8	0.7193
AT5G48290			Heavy metal transport/detoxifi...		Lus10025180 [exp]	10.5	0.7256
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10018381 [exp]	11.5	0.7360
AT2G38840			Guanylate-binding family prote...		Lus10014720 [exp]	13.6	0.6894
					Lus10035698 [exp]	17.4	0.6889
					Lus10003479 [exp]	19.2	0.7415

Compare expression of checked genes

Lus10007209 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.