Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66460 383 / 7e-131 MAN7, AtMAN7 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) AT1G02310 374 / 1e-127 MAN1 endo-beta-mannanase 1, Glycosyl hydrolase superfamily protein (.1) AT3G10890 357 / 1e-120 Glycosyl hydrolase superfamily protein (.1) AT5G01930 356 / 5e-120 MAN6, AtMAN6 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) AT3G10900 352 / 5e-119 Glycosyl hydrolase superfamily protein (.1) AT2G20680 318 / 1e-105 MAN2, AtMAN2 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) AT4G28320 318 / 3e-105 MAN5, AtMAN5 endo-beta-mannase 5, Glycosyl hydrolase superfamily protein (.1) AT3G30540 248 / 1e-79 Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007211 [exp] 669 / 0 AT1G02310 405 / 4e-134 endo-beta-mannanase 1, Glycosyl hydrolase superfamily protein (.1) Lus10007900 [exp] 387 / 6e-132 AT5G66460 417 / 4e-143 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10030347 [exp] 385 / 4e-131 AT5G66460 422 / 2e-145 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10014184 [exp] 370 / 3e-125 AT5G01930 674 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Lus10014288 [exp] 364 / 3e-123 AT5G66460 583 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10025995 [exp] 366 / 1e-120 AT5G66460 577 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10010089 [exp] 317 / 2e-108 AT1G02310 167 / 3e-50 endo-beta-mannanase 1, Glycosyl hydrolase superfamily protein (.1) Lus10033687 [exp] 321 / 2e-106 AT2G20680 644 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10031650 [exp] 320 / 3e-106 AT2G20680 655 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G184500 [exp] 482 / 4e-170 AT5G66460 447 / 5e-156 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.005G229600 [exp] 395 / 7e-136 AT5G66460 542 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.007G022000 [exp] 382 / 3e-130 AT5G66460 573 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.005G120500 [exp] 379 / 4e-129 AT5G66460 588 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.016G138600 [exp] 377 / 7e-128 AT5G01930 683 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Potri.006G109900 [exp] 372 / 2e-125 AT5G01930 659 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Potri.013G130400 [exp] 320 / 3e-106 AT2G20680 661 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Potri.006G009400 [exp] 299 / 2e-97 AT4G28320 430 / 2e-148 endo-beta-mannase 5, Glycosyl hydrolase superfamily protein (.1) Potri.019G070200 [exp] 265 / 1e-85 AT3G10890 302 / 3e-100 Glycosyl hydrolase superfamily protein (.1) Potri.016G014801 [exp] 144 / 7e-41 AT2G20680 231 / 2e-74 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00150 [flax] [poplar] Cellulase Cellulase (glycosyl hydrolase family 5)
Representative CDS sequence Show only first row Show all	>Lus10007210 pacid=23167609 polypeptide=Lus10007210 locus=Lus10007210.g ID=Lus10007210.BGIv1.0 annot-version=v1.0 ATGGGGACTTCGACTCAACACAAGAGTATAGTGGCAGCAACAGGCATGCTCCTAATCCTGACCCAATGCGGATTCATAGGAACGGCTGCTAGCCCCACCG GTTCATGCAACGGCTCAATTGCCAAAGCCAACGGAACCCGGTTTATGAAGAACGGGAAACCGGTTTACCTGAATGGATTCAACGCCTACTGGATGATCAT GTTGGCGGCTCAGGAGTCAACAAGAGGACAAGTCACCTCAGCTTTCGAAGCGGCTTCCAAAGTTGGGATGAACGTCGTCAGGACTTGGGCTTTTAACGAT GGTGCCGGTGGCCTCCAGGTTTCTCCTGGCGTCTACGACGAGAACGTGTTTAAGGGGTTGGATTTTGTGATTTCGGAGGCGGGCAAATTCGGGATAAATG TGATACTTGGTTTGGTGAATAATTTTAAGGACTTAGGGGGTCGGACGCAGTATGTTGCGTGGGCAAAAGAGCGTGGGCAGGCCATCTCCGGCGACGATGA CTTCTACACTAATCCAGTCATCAGGGGGTACTACAAGAATCATGTCAATGTGGTGCTGACAAGAGTGAACACAATAACAGGGGTAGCATACAAAGACGAC CCAACTATTTTTGCATGGGAGCTCATGAACGAGCCACGTTCCATGGACTTCTCTGGTGCACTTGTTCAGAACTGGGTGAGTGAAATGGCGGCTTACCTTA AATCAATCGACGGCTGCCATTTGCTGGAAGTAGGGCTCGAAGGATTCTACGGCCCTTCCAACCAAAACCTCAATCCTAACAACTGGCCTTTCGGCACTGA TTTCCTCTCCAACAATCAGATCCCTTTCATCGATTTTGCCACTACTCATCTTTATGCTGATCTCTGGTTGCTGAATTCAACCGAGACTCAAATAGAAGCA TATGTGGACAAGTTTCTGGAATCTCGCATCCAAGACTGCAACACAGTGATCAGGAAGCCACTGGTGATGGGAGAGTTTGGAAAATCCTTTAAGCAACCAG GGTATAGCTTGGCAGTTAGGGATGCTTACTACAGCAAGATCTATAACTCCATCTACAACAGTTCTAAGAAAGGAGGATCCTTTGCTGGTGGGATCTTCTG GCAGCTGCTGAATCCTGGAATGGACAATTGGGGAGATGGCTATCAAATTGTCCTTCAAAACAGCCCTTCGACTGCTTCCATCATTGCTCAACAATCTGAA AGGCTCTCTACTCTACCTGCTGCTATTTCCTAA
AA sequence Show only first row Show all	>Lus10007210 pacid=23167609 polypeptide=Lus10007210 locus=Lus10007210.g ID=Lus10007210.BGIv1.0 annot-version=v1.0 MGTSTQHKSIVAATGMLLILTQCGFIGTAASPTGSCNGSIAKANGTRFMKNGKPVYLNGFNAYWMIMLAAQESTRGQVTSAFEAASKVGMNVVRTWAFND GAGGLQVSPGVYDENVFKGLDFVISEAGKFGINVILGLVNNFKDLGGRTQYVAWAKERGQAISGDDDFYTNPVIRGYYKNHVNVVLTRVNTITGVAYKDD PTIFAWELMNEPRSMDFSGALVQNWVSEMAAYLKSIDGCHLLEVGLEGFYGPSNQNLNPNNWPFGTDFLSNNQIPFIDFATTHLYADLWLLNSTETQIEA YVDKFLESRIQDCNTVIRKPLVMGEFGKSFKQPGYSLAVRDAYYSKIYNSIYNSSKKGGSFAGGIFWQLLNPGMDNWGDGYQIVLQNSPSTASIIAQQSE RLSTLPAAIS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Lus10007210 [exp]	0	1
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10020877 [exp]	5.2	0.8606
AT5G13990		ATEXO70C2	exocyst subunit exo70 family p...		Lus10041536 [exp]	7.9	0.8748
					Lus10000650 [exp]	8.5	0.8638
AT5G27530			Pectin lyase-like superfamily ...		Lus10036205 [exp]	8.8	0.8437
AT5G41850			alpha/beta-Hydrolases superfam...		Lus10032373 [exp]	13.3	0.8600
AT2G45910			U-box domain-containing protei...		Lus10014771 [exp]	14.7	0.8305
					Lus10031014 [exp]	14.7	0.8587
AT2G41200			unknown protein		Lus10008568 [exp]	15.5	0.8389
AT5G64560		MRS2-2, ATMGT9	magnesium transporter 9 (.1.2)		Lus10041169 [exp]	15.8	0.8088
AT1G34050			Ankyrin repeat family protein ...		Lus10018757 [exp]	19.7	0.8087

Compare expression of checked genes

Lus10007210 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.