Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02310 406 / 2e-134 MAN1 endo-beta-mannanase 1, Glycosyl hydrolase superfamily protein (.1) AT5G66460 404 / 5e-133 MAN7, AtMAN7 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) AT3G10890 379 / 8e-124 Glycosyl hydrolase superfamily protein (.1) AT5G01930 372 / 1e-120 MAN6, AtMAN6 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) AT3G10900 363 / 1e-117 Glycosyl hydrolase superfamily protein (.1) AT2G20680 337 / 3e-107 MAN2, AtMAN2 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) AT4G28320 328 / 5e-104 MAN5, AtMAN5 endo-beta-mannase 5, Glycosyl hydrolase superfamily protein (.1) AT3G30540 253 / 5e-77 Glycosyl hydrolase superfamily protein (.1) AT1G80620 207 / 6e-59 S15/NS1, RNA-binding protein (.1) AT1G15810 206 / 2e-58 S15/NS1, RNA-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007210 [exp] 695 / 0 AT5G66460 401 / 5e-138 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10010090 [exp] 653 / 0 AT1G15810 265 / 7e-85 S15/NS1, RNA-binding protein (.1) Lus10007900 [exp] 405 / 3e-133 AT5G66460 417 / 4e-143 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10030347 [exp] 404 / 9e-133 AT5G66460 422 / 2e-145 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10014288 [exp] 392 / 1e-128 AT5G66460 583 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10014184 [exp] 392 / 2e-128 AT5G01930 674 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Lus10025995 [exp] 396 / 2e-126 AT5G66460 577 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10033687 [exp] 328 / 4e-104 AT2G20680 644 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10031650 [exp] 328 / 6e-104 AT2G20680 655 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G184500 [exp] 488 / 3e-166 AT5G66460 447 / 5e-156 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.007G022000 [exp] 404 / 5e-133 AT5G66460 573 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.005G120500 [exp] 402 / 1e-132 AT5G66460 588 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.005G229600 [exp] 402 / 2e-132 AT5G66460 542 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.016G138600 [exp] 398 / 2e-130 AT5G01930 683 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Potri.006G109900 [exp] 392 / 2e-127 AT5G01930 659 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Potri.013G130400 [exp] 341 / 7e-109 AT2G20680 661 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Potri.006G009400 [exp] 324 / 5e-102 AT4G28320 430 / 2e-148 endo-beta-mannase 5, Glycosyl hydrolase superfamily protein (.1) Potri.019G070200 [exp] 280 / 7e-87 AT3G10890 302 / 3e-100 Glycosyl hydrolase superfamily protein (.1) Potri.003G178800 [exp] 228 / 5e-66 AT1G80620 254 / 5e-80 S15/NS1, RNA-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00150 [flax] [poplar] Cellulase Cellulase (glycosyl hydrolase family 5) CL0600 [flax] [poplar] S15_NS1 PF00312 [flax] [poplar] Ribosomal_S15 Ribosomal protein S15
Representative CDS sequence Show only first row Show all	>Lus10007211 pacid=23167595 polypeptide=Lus10007211 locus=Lus10007211.g ID=Lus10007211.BGIv1.0 annot-version=v1.0 ATGGCTCTAATGCTTTCCAAGGCCAATCGGAAGCCCCTTGCCAACCATTCTCTCATCCAATTCCTCTCTCCATTACTCCCATCCTCCTCCTTCTCCGCCG CCGCCGATCCTCCTGAGCAGAATCCATTAGCCTCTTGCCTAAGCGATGTCAAGGCGAGCCTCAAGCAACGAGAAGAGCAGCAACAGAAGCAGCAGGGGTC ATGGAATCAGCCGCCGAGAAAACCTCCGAGTCCGGCTCCCTCCATGACGAATCGCGTTGGCAAAGCTGCCTCTAACGAAGAAATTAGAAAAATACTCTCC GGGTACCGTCCACAATCTCCCGCTACTGGAACTGGCTCCAACTCCACTGAACAGGTAAAGCCGCGGCAGCAGATAAACATTCAAGACCTATTCCAGCGAA ACGCGGTAGCCGGAGGTGACTCTACAGAAAGCATATGTATTGCTAACAATCAGCCTTTTTCTAGGCGAGATGGATTTCAGAAAATAACAGAAAGTCTCAG AGGCATGGTTAGAGATTCAAACGGCTTCAATGCTAGAGTTGTGAATGACACCAGTTCAAGGGCTTGGGGAAGGTCTTCGTCGGCGCCGTTGTTTGGTAAC ATACACGGAGTTGGCGGAGCAGGTGAAATTGGGAGGATGGGAGGCGATTTTGAGAAGCTTTATAGCTACACGGAGTTGGGGAATTTGTTGAAGAAATTGC GAACTGGATCGCAGAAGCAAGGGCAGAAAGGAGGGTTTTCGTTACAGGAGTTGAATGAGAGGTTGAGTAAGGTAAGGGAACAGGAGAAGGCAGAGTACAA CTCCAAACCTGAATATAAGAACCTCAGGAACACTTTGCAGACGTTGCAATCCGTGGAGCAGCAGACCAAGCAGACCAAGATGGGTCCAGTGTACAATCCA AACATATTGAGTCAGTTGGGTGCAACTCCAGATTATATGTTGCATCCTCCAAAGGAGGAATTGGTTGATAAGTATTTTCATCCAGATAACATGTCTTCTC AAGAGAAAATGAAACTTGAGCTTGCAAAAGTTAGGGAGGAGTTCAAGATGTCAGAGTCAGATTGTGGATCTGCCCGCGTTCAAGTCGCTCAACTTACCAC GAAGATCAAGCATCTATCATCAGTCCTGCACAAAAAGGACAAGCATTCTCGGAAGGGTCTCCAGGAAATGGTACAAAAGAGGAAGAAGCTGCTGAGGTAT CTACGAAGAACCGACTGGGATTCGTTCACCTTTGTTCTATCGAAACTAGTTTTAGTTTTCACCAATAATAGTACAGACACAGAGAGAGCTTCACCAGAAT CAATGGGGACTCTGATTCAACACAATATCATTAGTATATTAGTGGCCCTGCTACTCCTCACCCAATGCGGATTCATACAACAAACCACATTGGCTGCTGC CCTCACCGGTTCATGCAGACCCTCAATTGTCAAAGCTCAAGGAACCCGGTTTATTAAAAACGGGAAATCGGTTTACCTCAACGGATTCAACGCCTACTGG ATGATTATGTTGGCGGCTCAGGAGTCAACAAGAGGACAAGTTACGTTAGCCTTCAGAGAGGCTTCCAGAGTCGGGATGAACGTCGCCAGAACTTGGGCTT TTAACGACGGTGTCGGTAGGCTCCAGATTTCCCCCGGCGTCTACGACGAGAACGTCTTTAAGGGGTTGGATTTTGTGATATCGGAGGCAGGCAAGTTCGG GATAAATGTGATACTCGGTTTGGTGAATAATTATAATGACTTAGGAGGACGGCCGCAGTATGTAGCGTGGGCGAAGGAACGTGGCCAGGCCGTCTCCGGC GACGACGACTTCTACACCAATCCCGTCATCAGGGGATACTACAAGAATCATGTCAAGACGGTGCTGACGAGAGTGAACACAATAACGAAGGTGGCATACA AAGACGACCCAACTATTTTCGCATGGGAGCTCATGAACGAGCCGCGTTCGAACGACTACTCTGGCGCACTTGTTCAGAACTGGGTGAGTGAAATGGCGGC TTACCTTAAATCAATCGACGCCTGCCATATGCTTGAAGTAGGGCTCGAAGGATTCTACGGCCCTTCCAAGAGAAACCTGAATCCTAACAGCTGGCTTTTC GGCACTGATTTCCTCTCCAACAATCAGATCCCTTCCATCGACTTCGCCACTATTCATCTTTACGCTGATTTTTGGTTACAGAATTCAAGCAAGCCTGAAA TAGACGTGTACGCGGACAAGTTTCTGGTATCTCACATCCAAGACTGCAACAGAGTGATTAGGAAGCCACTAGTGCTGGCAGAGTTTGGCAAGTCGTTTAA GCTACCTGGCTACGGCGTAGCAGTTAGGGATGCTTACTACAAACACATATATAACTCCATCTACAAGAGTTCTAGTCGTCGAGGATCCTTTGCTGGTGGG ATCTTCTGGCAGCTGTTGAACCCTGGAATGGACAATTATGGAGATGGGTATCAAGTTGTACTTCAAAATAGCCCTTCTACTGCTTCCATCATTGCTCAAC AATCTAAAAGGCTCTCTGTTTTACATGTTGTTTCCTAA
AA sequence Show only first row Show all	>Lus10007211 pacid=23167595 polypeptide=Lus10007211 locus=Lus10007211.g ID=Lus10007211.BGIv1.0 annot-version=v1.0 MALMLSKANRKPLANHSLIQFLSPLLPSSSFSAAADPPEQNPLASCLSDVKASLKQREEQQQKQQGSWNQPPRKPPSPAPSMTNRVGKAASNEEIRKILS GYRPQSPATGTGSNSTEQVKPRQQINIQDLFQRNAVAGGDSTESICIANNQPFSRRDGFQKITESLRGMVRDSNGFNARVVNDTSSRAWGRSSSAPLFGN IHGVGGAGEIGRMGGDFEKLYSYTELGNLLKKLRTGSQKQGQKGGFSLQELNERLSKVREQEKAEYNSKPEYKNLRNTLQTLQSVEQQTKQTKMGPVYNP NILSQLGATPDYMLHPPKEELVDKYFHPDNMSSQEKMKLELAKVREEFKMSESDCGSARVQVAQLTTKIKHLSSVLHKKDKHSRKGLQEMVQKRKKLLRY LRRTDWDSFTFVLSKLVLVFTNNSTDTERASPESMGTLIQHNIISILVALLLLTQCGFIQQTTLAAALTGSCRPSIVKAQGTRFIKNGKSVYLNGFNAYW MIMLAAQESTRGQVTLAFREASRVGMNVARTWAFNDGVGRLQISPGVYDENVFKGLDFVISEAGKFGINVILGLVNNYNDLGGRPQYVAWAKERGQAVSG DDDFYTNPVIRGYYKNHVKTVLTRVNTITKVAYKDDPTIFAWELMNEPRSNDYSGALVQNWVSEMAAYLKSIDACHMLEVGLEGFYGPSKRNLNPNSWLF GTDFLSNNQIPSIDFATIHLYADFWLQNSSKPEIDVYADKFLVSHIQDCNRVIRKPLVLAEFGKSFKLPGYGVAVRDAYYKHIYNSIYKSSSRRGSFAGG IFWQLLNPGMDNYGDGYQVVLQNSPSTASIIAQQSKRLSVLHVVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02310		MAN1	endo-beta-mannanase 1, Glycosy...		Lus10007211 [exp]	0	1
AT4G28510		ATPHB1	prohibitin 1 (.1)		Lus10019161 [exp]	7.0	0.8413
AT3G52170			DNA binding (.1.2)		Lus10017453 [exp]	8.0	0.8224
AT5G07900			Mitochondrial transcription te...		Lus10002883 [exp]	11.4	0.8193
AT4G18820			AAA-type ATPase family protein...		Lus10029265 [exp]	41.6	0.7495
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10035632 [exp]	45.1	0.8004
AT2G19490			recA DNA recombination family ...		Lus10017151 [exp]	45.2	0.7723
AT5G27395			Mitochondrial inner membrane t...		Lus10035347 [exp]	45.8	0.7807
AT3G18240			Ribosomal protein S24/S35, mit...		Lus10008778 [exp]	50.0	0.7829
AT5G47680		AtTRM, TRM10	tRNA modification 10, unknown ...		Lus10039081 [exp]	59.2	0.7840
AT4G19650			Mitochondrial transcription te...		Lus10038336 [exp]	61.6	0.7639

Compare expression of checked genes

Lus10007211 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.