Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02305 530 / 0 Cysteine proteinases superfamily protein (.1) AT4G01610 521 / 0 Cysteine proteinases superfamily protein (.1.2) AT1G02300 484 / 9e-170 Cysteine proteinases superfamily protein (.1) AT3G45310 126 / 6e-32 Cysteine proteinases superfamily protein (.1.2) AT5G60360 120 / 1e-29 SAG2, AALP SENESCENCE ASSOCIATED GENE2, aleurain-like protease (.1.2.3) AT3G19400 112 / 4e-27 Cysteine proteinases superfamily protein (.1.2) AT1G29080 111 / 9e-27 Papain family cysteine protease (.1) AT2G34080 108 / 6e-26 Cysteine proteinases superfamily protein (.1) AT3G49340 107 / 2e-25 Cysteine proteinases superfamily protein (.1) AT3G43960 106 / 6e-25 Cysteine proteinases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010091 [exp] 699 / 0 AT1G02305 520 / 0.0 Cysteine proteinases superfamily protein (.1) Lus10042693 [exp] 117 / 7e-29 AT5G45890 379 / 1e-131 senescence-associated gene 12 (.1) Lus10033428 [exp] 115 / 3e-28 AT3G45310 565 / 0.0 Cysteine proteinases superfamily protein (.1.2) Lus10029658 [exp] 114 / 8e-28 AT5G45890 383 / 4e-133 senescence-associated gene 12 (.1) Lus10042691 [exp] 110 / 2e-27 AT5G50260 321 / 5e-110 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Lus10002184 [exp] 110 / 2e-26 AT1G06260 384 / 1e-133 Cysteine proteinases superfamily protein (.1) Lus10029649 [exp] 109 / 5e-26 AT5G45890 386 / 2e-134 senescence-associated gene 12 (.1) Lus10018083 [exp] 107 / 4e-25 AT5G50260 533 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Lus10015285 [exp] 105 / 8e-25 AT5G45890 406 / 8e-143 senescence-associated gene 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G184300 [exp] 567 / 0 AT1G02305 550 / 0.0 Cysteine proteinases superfamily protein (.1) Potri.002G184201 [exp] 560 / 0 AT1G02305 500 / 9e-179 Cysteine proteinases superfamily protein (.1) Potri.014G109801 [exp] 547 / 0 AT1G02305 515 / 0.0 Cysteine proteinases superfamily protein (.1) Potri.004G056500 [exp] 130 / 1e-33 AT5G45890 417 / 2e-146 senescence-associated gene 12 (.1) Potri.004G056000 [exp] 130 / 1e-33 AT5G45890 417 / 2e-146 senescence-associated gene 12 (.1) Potri.004G055900 [exp] 129 / 3e-33 AT5G45890 438 / 5e-155 senescence-associated gene 12 (.1) Potri.004G056366 [exp] 128 / 6e-33 AT5G45890 416 / 5e-146 senescence-associated gene 12 (.1) Potri.004G056100 [exp] 127 / 2e-32 AT5G45890 419 / 2e-147 senescence-associated gene 12 (.1) Potri.006G141700 [exp] 127 / 2e-32 AT3G45310 590 / 0.0 Cysteine proteinases superfamily protein (.1.2) Potri.004G056258 [exp] 126 / 3e-32 AT5G45890 417 / 8e-147 senescence-associated gene 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease CL0125 [flax] [poplar] PF08127 [flax] [poplar] Propeptide_C1 Peptidase family C1 propeptide CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Lus10007212 pacid=23167581 polypeptide=Lus10007212 locus=Lus10007212.g ID=Lus10007212.BGIv1.0 annot-version=v1.0 ATGATTCATGGGATCATATTGATGTTGTTCAGCTTAAACTTGACTGGTAAGCTAGTTTCATTATACGATACCCTGCAGGTCTCGACTGCGATCAGGTTAG ACTTGTTAGGGACATCGTATACACCATCAGCTGGGGAAATTGCAGATAGTGCATCGGCATTTATTGTACCGATCGTGCAATACTTGGCGAACGACAACAC ACTGTTACTGGCGAATGTGTATCCTTATTTCGCTTACATAGGAAATCCGAGACAGGTTGATTTGAAATATTCTAATTTTGGATTTCTAGGCCAGATAGTG GTCCAAGATGGTCCGTATGGGTACTCTAACCTCTTTCATGCCATACTTGATTCGCTTTATGCTACTCTTGAGAAGTTTGCTGCTCTCAATGTTCAATCTC AGATTCCTCCCCGAATAATAAAGCTTCATCCTTTACCACCTACACTCCCTCCCAAACTTCACTACCCTTCTTCTTCTTCTTCAACCATGGCGCCGAAGCT CTGCCTCGCTGCTCTTTTCCTTTTAGTTTCCCTCTTTCATTTCCAGGTCTCAGCAACAGAGATCAAGCTTAATCTTGGGTCTAGGATCCTTCAGGAATCG ATCGTTGATGTAGTCAACGGAAATCCAAGTGCAGGATGGAAGGCTGAAATCAGCCCTCGGTTCTCTAATTATACTGTTGCCGAATTCAAGTATATTTTGG GAGCCAAACCAACTCCAAAGAAGGAACTCCTTGGTGTCCCTGTCATGAGACATCCAAAGACCCTAGCTTTACCAAAGGAATTTGATGCCAGAAAGGCTTG GCCACAGTGTTCCACTCTTACAAGAATTCTGGATCAGGGTCACTGTGGATCTTGCTGGGCATTTGGGGCAGTAGAAGCATTATCCGACCGCTTTTGCATT CAATTCGGCATGAACATTTCCTTGTCTGCCAATGACCTTTTAGCCTGCTGTGGATTCCTCTGTGGGGAAGGTTGCGATGGAGGGTATCCTATTTCAGCAT GGAGGTACTTCGTCCAGAATGGTGTCGTGACCGAGGAGTGTGATCCATACTTTGATGATATCGGTTGTTCCCACCCGGGATGTGAGCCTGCATTTCCCAC TCCCAAATGTTCGAGAAAGTGTGTTGAGAAGAACCAGCTGTGGAGTGAGGAAAAGCACTATGGAGTTAATGCATATAGAGTCAGTTCTTCCGATGTTGAT AACATCATGGCTGAAGTTTATAAGAACGGACCAGTTGAGGTTGCATTCACAGTCTATGAGGACTTTGCACATTATAAATCTGGAGTTTACAAGCACATAA CGGGCGGTGAAATGGGCGGCCATGCTGTTAAGCTTATTGGATGGGGAACTACTGAAGATGGAGAAGACTATTGGCTTCTTGCTAACCAGTGGAACAGAAG CTGGGGTGAAAATGGATACTTCAGGATAAGAAGAGGAACAAACGAGTGTGGTATTGAGGAGGATGTGGTGGCTGGGATGCCCTCCTCCAGGAACATTGTT AAAGAGGTCATTAGCAATGATGCTACTGATAAAAGAGAGGCCATTGCTGCAGCTTGA
AA sequence Show only first row Show all	>Lus10007212 pacid=23167581 polypeptide=Lus10007212 locus=Lus10007212.g ID=Lus10007212.BGIv1.0 annot-version=v1.0 MIHGIILMLFSLNLTGKLVSLYDTLQVSTAIRLDLLGTSYTPSAGEIADSASAFIVPIVQYLANDNTLLLANVYPYFAYIGNPRQVDLKYSNFGFLGQIV VQDGPYGYSNLFHAILDSLYATLEKFAALNVQSQIPPRIIKLHPLPPTLPPKLHYPSSSSSTMAPKLCLAALFLLVSLFHFQVSATEIKLNLGSRILQES IVDVVNGNPSAGWKAEISPRFSNYTVAEFKYILGAKPTPKKELLGVPVMRHPKTLALPKEFDARKAWPQCSTLTRILDQGHCGSCWAFGAVEALSDRFCI QFGMNISLSANDLLACCGFLCGEGCDGGYPISAWRYFVQNGVVTEECDPYFDDIGCSHPGCEPAFPTPKCSRKCVEKNQLWSEEKHYGVNAYRVSSSDVD NIMAEVYKNGPVEVAFTVYEDFAHYKSGVYKHITGGEMGGHAVKLIGWGTTEDGEDYWLLANQWNRSWGENGYFRIRRGTNECGIEEDVVAGMPSSRNIV KEVISNDATDKREAIAAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02305			Cysteine proteinases superfami...		Lus10007212 [exp]	0	1
AT1G54100		ALDH7B4	aldehyde dehydrogenase 7B4 (.1...		Lus10013155 [exp]	1.7	0.9588
AT3G07560		APM2, PEX13	ABERRANT PEROXISOME MORPHOLOGY...		Lus10012306 [exp]	2.0	0.9566
AT2G01490			phytanoyl-CoA dioxygenase (Phy...		Lus10013462 [exp]	2.0	0.9548
AT5G65495			unknown protein		Lus10002656 [exp]	2.2	0.9538
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10032274 [exp]	2.4	0.9550
AT3G06240			F-box family protein (.1)		Lus10014793 [exp]	3.3	0.9481
AT5G51680			hydroxyproline-rich glycoprote...		Lus10015024 [exp]	4.9	0.9339
AT5G47720			Thiolase family protein (.1.2....		Lus10038749 [exp]	4.9	0.9521
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10028284 [exp]	5.2	0.9329
AT3G22200		HER1, GABA-T, P...	POLLEN-PISTIL INCOMPATIBILITY ...		Lus10003810 [exp]	5.2	0.9487

Compare expression of checked genes

Lus10007212 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.