Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17020 110 / 3e-29 ATSRG1, SRG1 senescence-related gene 1 (.1) AT4G25310 108 / 2e-28 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G78550 105 / 3e-27 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G17010 101 / 6e-26 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25300 99 / 1e-25 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT3G21420 95 / 2e-23 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 88 / 8e-21 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G24530 87 / 1e-20 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10500 82 / 8e-19 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25420 81 / 3e-18 AT2301, GA5, ATGA20OX1 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015252 [exp] 131 / 3e-37 AT1G17020 375 / 1e-129 senescence-related gene 1 (.1) Lus10011979 [exp] 118 / 3e-32 AT1G17020 374 / 4e-129 senescence-related gene 1 (.1) Lus10011980 [exp] 118 / 4e-32 AT1G17020 382 / 1e-132 senescence-related gene 1 (.1) Lus10025369 [exp] 118 / 5e-32 AT1G17010 187 / 4e-56 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10011981 [exp] 117 / 9e-32 AT1G17020 375 / 2e-129 senescence-related gene 1 (.1) Lus10042493 [exp] 111 / 5e-31 AT1G17020 242 / 4e-80 senescence-related gene 1 (.1) Lus10011985 [exp] 115 / 7e-31 AT1G17020 367 / 4e-126 senescence-related gene 1 (.1) Lus10026173 [exp] 113 / 3e-30 AT1G17020 443 / 5e-156 senescence-related gene 1 (.1) Lus10022292 [exp] 107 / 5e-28 AT1G17020 449 / 5e-159 senescence-related gene 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G025900 [exp] 125 / 5e-35 AT4G25300 410 / 3e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.001G382400 [exp] 118 / 2e-32 AT1G17020 446 / 1e-157 senescence-related gene 1 (.1) Potri.001G355100 [exp] 112 / 8e-30 AT1G17020 439 / 1e-154 senescence-related gene 1 (.1) Potri.001G381700 [exp] 104 / 6e-27 AT1G17020 436 / 2e-153 senescence-related gene 1 (.1) Potri.001G355200 [exp] 93 / 1e-22 AT1G17020 329 / 3e-111 senescence-related gene 1 (.1) Potri.010G023600 [exp] 91 / 5e-22 AT3G21420 511 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101200 [exp] 90 / 1e-21 AT5G05600 474 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101100 [exp] 88 / 5e-21 AT5G05600 462 / 1e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.016G117100 [exp] 86 / 4e-20 AT5G05600 491 / 4e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G188000 [exp] 86 / 4e-20 AT5G05600 511 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10007213 pacid=23167604 polypeptide=Lus10007213 locus=Lus10007213.g ID=Lus10007213.BGIv1.0 annot-version=v1.0 ATGGACTGGTGCATGGAAACCCTGGATGAATACTCAACAACACTGTATAGTTTGACACTGACGATTCTCGATGTTATAGCAAAATCTTTGGGAGTCCATC AAAATGAGATGAGGGAGTTGTTCACCGGGGGTTGGCAGAACATAAGAGTCAACTATTATCCACCATGTCCACAACCAGACCTGGCAATGGGGTTCAACCC TCATTCTGATCCTGTTGGTCTTACTGTCCTCTTCCAACTCACTACTGATACGCATGGCCTAGAAATTAAAAAAGACGGTCGATGGGCTTCAGTTGCTCCT CTTCCTAATGCATTCATCATCAATGTTTGTGACATCATCGAGGGGGAAGTGCTATGCAGCAGGTGGTTTTCATCTAGACCACTTACTGGAGTTGCCGAGA CAGGTGATCTTGACGATGCGAGCACAACCATCTGCTACTTGATTGCGTTGTTGGGCTCCACTGTTTTTGCGGACCGCAGTCAGACTCGTGTCTGTATTGG GGATCTTGAGGGATTGTGA
AA sequence Show only first row Show all	>Lus10007213 pacid=23167604 polypeptide=Lus10007213 locus=Lus10007213.g ID=Lus10007213.BGIv1.0 annot-version=v1.0 MDWCMETLDEYSTTLYSLTLTILDVIAKSLGVHQNEMRELFTGGWQNIRVNYYPPCPQPDLAMGFNPHSDPVGLTVLFQLTTDTHGLEIKKDGRWASVAP LPNAFIINVCDIIEGEVLCSRWFSSRPLTGVAETGDLDDASTTICYLIALLGSTVFADRSQTRVCIGDLEGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10007213 [exp]	0	1

Compare expression of checked genes

Lus10007213 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.