Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46915 681 / 0 Protein of unknown function (DUF3754) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010092 [exp] 1387 / 0 AT2G46915 704 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10031975 [exp] 82 / 5e-16 AT3G19340 754 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10012581 [exp] 82 / 8e-16 AT3G19340 787 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10035127 [exp] 81 / 1e-15 AT3G19340 749 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10041512 [exp] 74 / 1e-13 AT3G19340 756 / 0.0 Protein of unknown function (DUF3754) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G183900 [exp] 871 / 0 AT2G46915 744 / 0.0 Protein of unknown function (DUF3754) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12576 [flax] [poplar] DUF3754 Protein of unknown function (DUF3754)
Representative CDS sequence Show only first row Show all	>Lus10007214 pacid=23167594 polypeptide=Lus10007214 locus=Lus10007214.g ID=Lus10007214.BGIv1.0 annot-version=v1.0 ATGTTTTCGTTGAGAAATTATGGCACCGCAGCTCCGTCTGCCGCATCGTTTACACAGCCATGGCGTCGAACTCCTTCTCCCTTCTTCCCTCATTCCGCCC CGCTTCAACTCCTTCGTTGTTCTTTGAAAGTAGAGGAGTTATCGATGGAGGATTATTCTGATACAAACGGAAGCCTCAATAGCTCATTGACGGCGACCAC TGCCAACAGTTTCAGCAGTTTCCTTCGGACAATTCGAGAGCAAGAAGAAGAAGAGCAGAAGCAGGCGGAAGACGAAGAGGAGAACGAAGAGAACGATGAG AAAGGGATTTCCAGAATACGAGTGCCGAGGCAGAAGTACATTCCGGTTTCCAAGGCAGATATTCTGGACGCCATTCTTCTCAAGTTTTTTGACTCTTCAG ACGACGTTGATCAGTTCCTCAACGTATCTTCGTGTCTGGATTCTGTACTTAATGCGGAACACAAGAACATTTTGGAAGAGATGCGAACTGACTATTCCCT TCTTCAATCCTCTGGTACCGAGGGAATGGTTGATGAAGGATCTTCAACTGTAGCCGAAGAACCAATTGCTAATGGGGAGGATGTTAGCTCTGTTCTTGAT GACACTGTCAACGGAATTGTGAGTGATGAGAAGAACTTGGGGGAAGAGGCTAAAGTAAACATGCCTATGCATTTCAACTATGGTCTGGATTTCAGGAATC TTTTACGTTATTCGGCTGGAAACGGGAGGAGAGTTAAGAGTGCGAGCCCTAGACATGCAGTTGCTGCTCGTTTTCAGCGTGCTTTCATGCAGCTTCTCGA TAATGCACAGTTTCAGGAACTATCAGCTAGTGATTTGATGTTGACATCTGCTTTGAACTCGGACTATCTCCTTACATTACCAATATATGTGGACTGGAAG AAAGCATCTGAATCCAACGCAATAATATTCAGGAGGGGTTATGCAACTGAGAGGGAGAAAGGCTTGCTGATTGGTGAAAAGGTGGACTATATACAGTCCA GACTTCTTCAAAAGATCTTCTTCCTTGCCTCAAAGCCATTGGGAAAAGTTGGTAAATGGATAAAACAGTCAATCAGAGAGGCTTCTGAGACACAAGAAGC ACAGCATTGGATCAAAAAGATGGCGCCATGGGTTGAGGAATTATCTTCTTTAAGGAGTTCGTTCATTACTGGAGATCAAGCTTCAGGTGATCCACAAGAA CCAAATGAAATATCAGATAATGATCTTCCCATTTGGCTGGCAGCACAGAGAGCAGTAAGTCGTTATGAAGGGTTCCTGTCTCCAAGTGGACCCCGGGAAA GGCTGTTTAGGAGGCTTATGACTTTGATAGGGCTTGTCCCTCCCATACCAGAAATGTCATTTGAACACGGCAGTGAAAGCAATGACTCTGAAACTCATCT GAGGCCAATATTCTTGTCAAGGATATCATTGAGTGATATATGGAAGCCTGCTAAAAGAAAATACTGTGGAAACAATCCATGGAAGATGTTAAGAAAAGCT TTCTCCATTGTTCTCTCACAGTCCGTTCTCCAGGAGCCTGCATTTGAAGAACTAATTTTGCTCTTTACTGAGGATGAGGATGAGAATGAAAGGGATGATA ATACAGATAAAGATGAGGTTGCATCACTGCGGTTAAAGATTTATGAGAAAATTCCAATTCCAGACTTACTAGTTGTTTTTCCTCACAAGAAGCTCTCCTT CCGTATACTAGACACGGTTCGCTTGGATGCTACAGCATTACTGGGACTGTCCGCATATGTCATTAACTACAAGTTTGAGAACATATTATCCTCCCCGTCA GCATTTGGACTTGATGCCATTGCCCTCACTGCCCTAATAGTATACCTCACCCGTGTGGCATTGGGTTACAAACAAACATGGGATCGTTATCAACTACTTG TTAACAGGACCCTTTATGAGAAAACACTAGCAAGTGGGTTTGGCTCTGTGTATTTTCTTCTGGATGCGTCTGAACAGCAGCAATACAAGGAGGCTATTCT GAGCTATGCAGTTCTTCTCAAAGCAAAGAATAGCCAGGGCACAACTTTGAGAAGCGTTGGAGATGAATGCGAGCGTTTCATTTACGATGCTTTCAGAGTA AAAGTGGAGATGCCAGTGGATAATGCAGTGAAGACGTTGCTAAGACTAGGGCTTGCTATGGAAACACCTCCTCGTTCTGAAGGTGATGGAACAAACAGGA AAGTAAAGGCCATTCCCTGCGAGAAGGCGTACGAGGTGCTTAAACAACGTTGGATTGGGTTGCTTGGTTAA
AA sequence Show only first row Show all	>Lus10007214 pacid=23167594 polypeptide=Lus10007214 locus=Lus10007214.g ID=Lus10007214.BGIv1.0 annot-version=v1.0 MFSLRNYGTAAPSAASFTQPWRRTPSPFFPHSAPLQLLRCSLKVEELSMEDYSDTNGSLNSSLTATTANSFSSFLRTIREQEEEEQKQAEDEEENEENDE KGISRIRVPRQKYIPVSKADILDAILLKFFDSSDDVDQFLNVSSCLDSVLNAEHKNILEEMRTDYSLLQSSGTEGMVDEGSSTVAEEPIANGEDVSSVLD DTVNGIVSDEKNLGEEAKVNMPMHFNYGLDFRNLLRYSAGNGRRVKSASPRHAVAARFQRAFMQLLDNAQFQELSASDLMLTSALNSDYLLTLPIYVDWK KASESNAIIFRRGYATEREKGLLIGEKVDYIQSRLLQKIFFLASKPLGKVGKWIKQSIREASETQEAQHWIKKMAPWVEELSSLRSSFITGDQASGDPQE PNEISDNDLPIWLAAQRAVSRYEGFLSPSGPRERLFRRLMTLIGLVPPIPEMSFEHGSESNDSETHLRPIFLSRISLSDIWKPAKRKYCGNNPWKMLRKA FSIVLSQSVLQEPAFEELILLFTEDEDENERDDNTDKDEVASLRLKIYEKIPIPDLLVVFPHKKLSFRILDTVRLDATALLGLSAYVINYKFENILSSPS AFGLDAIALTALIVYLTRVALGYKQTWDRYQLLVNRTLYEKTLASGFGSVYFLLDASEQQQYKEAILSYAVLLKAKNSQGTTLRSVGDECERFIYDAFRV KVEMPVDNAVKTLLRLGLAMETPPRSEGDGTNRKVKAIPCEKAYEVLKQRWIGLLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46915			Protein of unknown function (D...		Lus10007214 [exp]	0	1
AT5G04360		ATPU1 ,ATLDA	PULLULANASE 1, limit dextrinas...		Lus10038675 [exp]	3.2	0.8550
AT3G11560			LETM1-like protein (.1.2.3.4)		Lus10017005 [exp]	3.3	0.8894
AT5G20380		PHT4;5	phosphate transporter 4;5 (.1)		Lus10038110 [exp]	3.9	0.8847
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Lus10028812 [exp]	4.2	0.8465
AT1G65070			DNA mismatch repair protein Mu...		Lus10025647 [exp]	5.0	0.8634
AT4G13970			zinc ion binding (.1)		Lus10003970 [exp]	8.1	0.8850
AT4G13150			unknown protein		Lus10038175 [exp]	8.5	0.8559
AT1G54570			Esterase/lipase/thioesterase f...		Lus10018998 [exp]	11.2	0.8435
AT1G13040			Pentatricopeptide repeat (PPR-...		Lus10011646 [exp]	11.2	0.8619
AT3G11560			LETM1-like protein (.1.2.3.4)		Lus10021329 [exp]	11.7	0.8568

Compare expression of checked genes

Lus10007214 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.