Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17980 109 / 1e-26 NAC ANAC071 NAC domain containing protein 71 (.1) AT1G54330 109 / 1e-26 NAC ANAC020 NAC domain containing protein 20 (.1) AT3G17730 108 / 2e-26 NAC ANAC057 NAC domain containing protein 57 (.1) AT5G17260 111 / 5e-26 NAC ANAC086 NAC domain containing protein 86 (.1) AT3G10490 105 / 1e-25 NAC ANAC051, ANAC052 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) AT3G03200 108 / 4e-25 NAC ANAC045 NAC domain containing protein 45 (.1) AT3G10480 108 / 4e-25 NAC ANAC050 NAC domain containing protein 50 (.1.2.3) AT1G65910 108 / 7e-25 NAC ANAC028 NAC domain containing protein 28 (.1) AT3G15170 104 / 9e-25 NAC ATNAC1, CUC1, ANAC054 CUP-SHAPED COTYLEDON1, Arabidopsis NAC domain containing protein 54, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT5G46590 103 / 1e-24 NAC ANAC096 NAC domain containing protein 96 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010096 [exp] 607 / 0 AT5G17260 122 / 2e-30 NAC domain containing protein 86 (.1) Lus10005144 [exp] 114 / 1e-28 AT4G35580 142 / 3e-39 NAC transcription factor-like 9 (.1.2.3) Lus10030174 [exp] 113 / 2e-28 AT4G35580 152 / 5e-43 NAC transcription factor-like 9 (.1.2.3) Lus10030978 [exp] 110 / 1e-26 AT4G17980 273 / 6e-91 NAC domain containing protein 71 (.1) Lus10035373 [exp] 110 / 4e-26 AT4G17980 280 / 2e-93 NAC domain containing protein 71 (.1) Lus10026373 [exp] 106 / 3e-25 AT3G17730 348 / 2e-121 NAC domain containing protein 57 (.1) Lus10042284 [exp] 105 / 4e-25 AT3G17730 348 / 1e-121 NAC domain containing protein 57 (.1) Lus10030478 [exp] 107 / 8e-25 AT5G39820 297 / 4e-98 NAC domain containing protein 94 (.1) Lus10007377 [exp] 108 / 9e-25 AT1G65910 431 / 7e-143 NAC domain containing protein 28 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G108100 [exp] 136 / 1e-35 AT5G17260 139 / 3e-37 NAC domain containing protein 86 (.1) Potri.002G182400 [exp] 121 / 2e-29 AT4G35580 158 / 4e-42 NAC transcription factor-like 9 (.1.2.3) Potri.002G181800 [exp] 121 / 3e-29 AT4G01550 138 / 1e-35 NAC with Transmembrane Motif 2, NAC domain containing protein 69 (.1.2) Potri.002G182000 [exp] 113 / 3e-28 AT4G35580 186 / 9e-56 NAC transcription factor-like 9 (.1.2.3) Potri.014G076000 [exp] 111 / 3e-28 AT4G35580 161 / 5e-47 NAC transcription factor-like 9 (.1.2.3) Potri.002G182300 [exp] 111 / 1e-27 AT4G35580 184 / 4e-55 NAC transcription factor-like 9 (.1.2.3) Potri.014G107900 [exp] 108 / 7e-27 AT4G35580 183 / 7e-55 NAC transcription factor-like 9 (.1.2.3) Potri.014G107500 [exp] 112 / 2e-26 AT4G35580 143 / 3e-37 NAC transcription factor-like 9 (.1.2.3) Potri.017G139500 [exp] 113 / 3e-26 AT1G65910 461 / 1e-154 NAC domain containing protein 28 (.1) Potri.014G107700 [exp] 106 / 9e-26 AT4G35580 178 / 2e-52 NAC transcription factor-like 9 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10007216 pacid=23167587 polypeptide=Lus10007216 locus=Lus10007216.g ID=Lus10007216.BGIv1.0 annot-version=v1.0 ATGGAGAATGTTGTTGAATCAGCAGCTCGATCGTCGGACGAAGTGGTTGGCTACCGTTTTCATCCAAGAGATGATGAGCTTGTTGATTATTATCTTAAGC GAAAAATATTGGGTGAGGATATCGGAGATGTTTCATTAGATGAAGTCAAAATCTATTGCTCTGACCCGTGGGAGTTGCTTGGGCGATCAAACAATCAATT AGACGAGTGGGTTTTCTATTGCTTTTGTCCTCGTGATTACAAGTACGTCAACAGCAAAAGATGTAATAGGACTACAAAGAATGGTTATTGGAAGCCTACC GGCAAAATTCGTGACGTCAAAGGAAAGAAAACAAAGAAAAAGATTGGTACAAAGAAGACTTTGGTTTTTTATAAGAAAGACAAGGAGTTCCCCAAGGGTC TTATAACTCCATATGTGATGCATGAATACGAGTATATGGCTGATCCAAACTCATTAGATAAGGAGAAGTTTACTCTTTGTAAATTAAAGAGGAAGAGAGA CAAAAGGATTCCAAAAAACACTAACACAACAAACCATCACTCTAGTACAATTTGCCTTGAGGCTTCTCATTTTGGTGATGAAATTTCACCTTTACTCCGA GGTGAAAGATGTTATAGCATACAAGAAATTACTTGTGAAAGTAGTGAGGCGAGTCATGTGCTGGGCTCTGAATTTGGAAATCAAATGTCATTGATGGAAA TGCGCGAAGGGAATGATGGTCTTGAGCAAGAGTCTCATGAATATAGTGAAGCAAATTGTCTGAAGTCTTCTGACTTGGCGAGTCCAGTTCTCCTTGAAGA GGTAACTAACGGTTATCAAGTTGGTAATCAAGGTCCCTGGGAGTACAACAAGTCAAATTGTTTGTTGGCTTCTGATTTGCAGAGTCCTGTGTCACCACCT AAAGATGAGGGGTGTTTGACACCATCGACTTTAGAGAGTCATTCTGTTTGGGATAATGATGGACAAGGCCAAGTAGTGGATTCTATTGCCAGAATCCACC AACATTCAAACATACAGATTGATGCATCTTGTCATGGAATTCACCAACATTCGAACAAACAGATTGATGCATCTTGTCATGAGGTGGAACCTTGTTTTTC TGGAACACCAACTCCTAACTTTGAATATCAGAAGCAGATGGAGATGCCCACCCTTATCAGTGCAATTGATTGCATTGACTGGGTCAATCTCCTATTTCCT GAGCGAGATTTCCTTCTGTACAAGTTAATGAGGAAATCTTCGTCGGAAGGTAGTAATGACGATGATGAAGACGACGAAGAAGTGGAAGAACACATCGAAG GAGTTGAAACAAGTAGTGGGATGTCCTGTAATTTTGACAATCCGAATACTCCTTTTGGGAATCATCCCCTTTCAACTCCTACTGCCAACTTGGACCACAA TGAACTCCAACTACAAGCTTATCTGGACAGATTCGCCAGGTATGATGAAAGAAGTTACAACCTTAACTCTGTCATGAATATGGAAGACGTTCAGACGAAC TACCAGATACGTAATCATGAACTGAGTTGGACAGTAGCTTTTGATGTTTGA
AA sequence Show only first row Show all	>Lus10007216 pacid=23167587 polypeptide=Lus10007216 locus=Lus10007216.g ID=Lus10007216.BGIv1.0 annot-version=v1.0 MENVVESAARSSDEVVGYRFHPRDDELVDYYLKRKILGEDIGDVSLDEVKIYCSDPWELLGRSNNQLDEWVFYCFCPRDYKYVNSKRCNRTTKNGYWKPT GKIRDVKGKKTKKKIGTKKTLVFYKKDKEFPKGLITPYVMHEYEYMADPNSLDKEKFTLCKLKRKRDKRIPKNTNTTNHHSSTICLEASHFGDEISPLLR GERCYSIQEITCESSEASHVLGSEFGNQMSLMEMREGNDGLEQESHEYSEANCLKSSDLASPVLLEEVTNGYQVGNQGPWEYNKSNCLLASDLQSPVSPP KDEGCLTPSTLESHSVWDNDGQGQVVDSIARIHQHSNIQIDASCHGIHQHSNKQIDASCHEVEPCFSGTPTPNFEYQKQMEMPTLISAIDCIDWVNLLFP ERDFLLYKLMRKSSSEGSNDDDEDDEEVEEHIEGVETSSGMSCNFDNPNTPFGNHPLSTPTANLDHNELQLQAYLDRFARYDERSYNLNSVMNMEDVQTN YQIRNHELSWTVAFDV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17260	NAC	ANAC086	NAC domain containing protein ...		Lus10007216 [exp]	0	1
AT5G17260	NAC	ANAC086	NAC domain containing protein ...		Lus10010096 [exp]	1.0	0.9034
AT5G22290	NAC	FSQ6, FAN, ANAC...	fructose-sensing quantitative ...		Lus10042518 [exp]	5.7	0.6991
AT4G17050		UGLYAH	ureidoglycine aminohydrolase (...		Lus10040144 [exp]	6.9	0.6774
AT2G38430			unknown protein		Lus10030356 [exp]	26.6	0.5992
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Lus10040270 [exp]	27.7	0.6655
AT1G20080		SYT2, NTMCTYPE1...	synaptotagmin 2, Calcium-depen...		Lus10017268 [exp]	35.1	0.6765
AT5G39360		EDL2	EID1-like 2 (.1)		Lus10042699 [exp]	35.4	0.6644
AT5G26990			Drought-responsive family prot...		Lus10002441 [exp]	42.1	0.5952
AT5G59613			unknown protein		Lus10040848 [exp]	50.8	0.6259
AT1G01020		ARV1	Arv1-like protein (.1.2)		Lus10010099 [exp]	52.4	0.6499

Compare expression of checked genes

Lus10007216 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.