Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09790 449 / 8e-156 COBL6 COBRA-like protein 6 precursor (.1) AT3G02210 422 / 3e-145 COBL1 COBRA-like protein 1 precursor (.1) AT3G29810 410 / 1e-140 COBL2 COBRA-like protein 2 precursor (.1) AT5G60920 409 / 3e-140 COB COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT5G15630 398 / 3e-136 IRX6, COBL4 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT5G60950 122 / 3e-32 COBL5 COBRA-like protein 5 precursor (.1) AT4G16120 125 / 8e-31 ATSEB1, COBL7 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) AT5G49270 118 / 2e-28 DER9, MRH4, SHV2, COBL9 SHAVEN 2, MUTANT ROOT HAIR 4, DEFORMED ROOT HAIRS 9, COBRA-LIKE 9, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT4G27110 106 / 2e-24 COBL11 COBRA-like protein 11 precursor (.1) AT3G20580 102 / 5e-23 COBL10 COBRA-like protein 10 precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029360 [exp] 625 / 0 AT1G09790 499 / 7e-176 COBRA-like protein 6 precursor (.1) Lus10016188 [exp] 426 / 3e-149 AT1G09790 304 / 2e-101 COBRA-like protein 6 precursor (.1) Lus10012598 [exp] 420 / 1e-144 AT3G02210 697 / 0.0 COBRA-like protein 1 precursor (.1) Lus10007986 [exp] 416 / 5e-143 AT5G60920 755 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10021144 [exp] 416 / 7e-143 AT5G60920 749 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034666 [exp] 410 / 1e-140 AT5G15630 627 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034379 [exp] 409 / 4e-140 AT3G02210 685 / 0.0 COBRA-like protein 1 precursor (.1) Lus10017866 [exp] 405 / 9e-139 AT5G15630 625 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10017863 [exp] 399 / 4e-136 AT5G15630 717 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G219200 [exp] 533 / 0 AT1G09790 511 / 2e-180 COBRA-like protein 6 precursor (.1) Potri.004G117100 [exp] 426 / 8e-147 AT3G02210 724 / 0.0 COBRA-like protein 1 precursor (.1) Potri.015G060200 [exp] 411 / 4e-141 AT5G15630 669 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060100 [exp] 404 / 1e-138 AT5G15630 739 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060000 [exp] 403 / 7e-138 AT5G60920 759 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G117200 [exp] 384 / 8e-131 AT5G15630 679 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.012G062200 [exp] 377 / 5e-128 AT5G15630 586 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.017G098700 [exp] 371 / 9e-126 AT5G60920 614 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.017G098600 [exp] 370 / 1e-125 AT5G60920 601 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G167100 [exp] 326 / 7e-108 AT3G29810 407 / 2e-139 COBRA-like protein 2 precursor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04833 [flax] [poplar] COBRA COBRA-like protein
Representative CDS sequence Show only first row Show all	>Lus10007217 pacid=23167598 polypeptide=Lus10007217 locus=Lus10007217.g ID=Lus10007217.BGIv1.0 annot-version=v1.0 ATGGGTTCGGTCTCGATTTTGATCATCATCTTCTGCCTCATCATCGCCTTCTCCTCGCATTCTTATGGATATGATCCACTGGACCCAGCTGCCAACATAA CCATCAAATGGGATCTCGTACTCTCAGAAGACAGCAGTAACAACGTGAAGGTGTCCATACTAAACTACCAACAGTATCGACACATAGAGGCACCAGGGTG GAAACTAGGGTGGGACTGGAAAGGCAAAGAAGCTATATCACCCATTACTGGAGCTGAAGCTACACAGCAAGGTGACTGCTCCAGATTCAAGGGCCAACTA CCACTTCCTCATTGCTGCAACGAACAACCGGTCATCGTAGATCTCCTTCCTGGAGCTCCCTACAATATGCAGTCTCCAAACTGCTGCAAAGGAGGCGTCC TCTCATCCATGGCACAAGACAGTTCCACCTCTGCAGCTTCTTTTCAGATGACCATTATAGGCTCTTCTGATTTCGCAATGCCTGAGAATTTCACCCTCAG ATTGCCCGGATACACTTGCGGACAGCCTTTCGAAGTCCAACCGACCAAACTCTCTGTTGATGGTGGCAGGAGATGGATTCAAGTATTCAGGACTTGGAAT GCAGTATGTGGTTACTCATTGTCCATGGTATCACCTTCTCCAAGATGCTGCGTTTCATTGTCGGCTTTCTACGACAGTACGATTGTACCGTGTACACATT GTAGCTGTGGGTGTCAAGGACAACGTGGATCAAGATGTGCCAAGTATGGGGAGAACCCATCTCTGCTGCAACAAAAGCAAGATCCAAATGAAGAGCAACC TCCATTTGTGAGATGTACAACCCACATGTGCCCCATTAGGATTCATTGGCATTTGAAGGAGAGCTACACACAGTACTGGAGAGTGAAGATCACCATCACC AACTTCAACATCATCAAAAATTACTCCCAGTGGACTTTGGTGGTCTTGCATCCCAACTTGAAGAATATCACCCAAGTTTTCAGCTTCAACTATGTCCCCC TCGACCAATTCCGCTACACAAATGAGAGTGGCATGTTCTGGGGGATCAAATATTTCAATGACATGCTCTTACAAGAAGGCGAGAACGGGAATGTTCAGAG TGAGATTCTGCTAGCTAAAGATGCAGAGGTGTTCACTTTCGGGGAAGGATGGGCTTTCCCAAGAAGGATTTTGTTCAATGGCGATGAATGTGTTATGCCA CTGCCAAATGACTATCCAAAGCTCCCTGCTATTTCTGCCTTGTCTTCGCTCAACTCAAATCCCATCCCCTTGTTTTCATTCTTCTCAATTTGGCTTTCTC TGCTTCTTTTAGTCACTCTCCTCACAGTTGTTTGA
AA sequence Show only first row Show all	>Lus10007217 pacid=23167598 polypeptide=Lus10007217 locus=Lus10007217.g ID=Lus10007217.BGIv1.0 annot-version=v1.0 MGSVSILIIIFCLIIAFSSHSYGYDPLDPAANITIKWDLVLSEDSSNNVKVSILNYQQYRHIEAPGWKLGWDWKGKEAISPITGAEATQQGDCSRFKGQL PLPHCCNEQPVIVDLLPGAPYNMQSPNCCKGGVLSSMAQDSSTSAASFQMTIIGSSDFAMPENFTLRLPGYTCGQPFEVQPTKLSVDGGRRWIQVFRTWN AVCGYSLSMVSPSPRCCVSLSAFYDSTIVPCTHCSCGCQGQRGSRCAKYGENPSLLQQKQDPNEEQPPFVRCTTHMCPIRIHWHLKESYTQYWRVKITIT NFNIIKNYSQWTLVVLHPNLKNITQVFSFNYVPLDQFRYTNESGMFWGIKYFNDMLLQEGENGNVQSEILLAKDAEVFTFGEGWAFPRRILFNGDECVMP LPNDYPKLPAISALSSLNSNPIPLFSFFSIWLSLLLLVTLLTVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09790		COBL6	COBRA-like protein 6 precursor...		Lus10007217 [exp]	0	1
AT1G61720		BAN	BANYULS, NAD(P)-binding Rossma...		Lus10032370 [exp]	2.4	0.9137
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Lus10015407 [exp]	5.3	0.8210
AT2G33060		AtRLP27	receptor like protein 27 (.1)		Lus10004313 [exp]	7.2	0.8784
AT5G65730		XTH6, XTR10	xyloglucan endotransglucosylas...		Lus10011597 [exp]	8.0	0.8631
AT5G20860			Plant invertase/pectin methyle...		Lus10017665 [exp]	12.0	0.8664
AT5G20860			Plant invertase/pectin methyle...		Lus10033621 [exp]	15.7	0.8612
AT1G63710		CYP86A7	"cytochrome P450, family 86, s...		Lus10032278 [exp]	17.0	0.8610
AT1G78950		ATLUP3	Terpenoid cyclases family prot...		Lus10016440 [exp]	19.0	0.8548
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10030097 [exp]	19.3	0.8565
AT4G02300			Plant invertase/pectin methyle...		Lus10001466 [exp]	21.2	0.8545

Compare expression of checked genes

Lus10007217 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.