Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01020 136 / 4e-41 ARV1 Arv1-like protein (.1.2) AT4G01510 114 / 5e-32 ARV2 Arv1-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010099 [exp] 236 / 1e-79 AT1G01020 205 / 2e-66 Arv1-like protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G107300 [exp] 181 / 2e-58 AT1G01020 228 / 3e-75 Arv1-like protein (.1.2) Potri.002G181700 [exp] 141 / 4e-43 AT1G01020 84 / 1e-20 Arv1-like protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04161 [flax] [poplar] Arv1 Arv1-like family
Representative CDS sequence Show only first row Show all	>Lus10007219 pacid=23167583 polypeptide=Lus10007219 locus=Lus10007219.g ID=Lus10007219.BGIv1.0 annot-version=v1.0 ATGGGATACCGGTGTGTAGACTGTGGATTTCCTATCACAACACTGTACGTTCAGTACTCTCCTGGAAATATTCGGCTCATGAAATGTGAAAACTGCAAAG CGGTTGCGGACGAGTACATCGAATGCGAGTTCATGATTATCGTGATCGATTTGATTCTGCACAAGCCGAAAGCGTACAGGCATCTCCTCTTCAACGTCCT CAATCAGAAAACTGCAGTTGTTGAGGTGTTCATGGATGTTCTCGTGGGAAATTCACTTTTTCTCTGTGTTTTTCTTCTAGCCGCAAAGATCATGCTGAAT TTCTCTATAACATTCTCCAGACTCCGGGAGCTTTTGCTTGTAATTCTGGTGTCAAGTTATTTTAAGATTTTCCTTATCACCATGATGACAAATCTCCATC CTATAAATTATTCAGTAATTTCTAATAGAGTCCCCACTGCAGCTAACATGGTGGCACTTGAAGGATCATGGACATGCTACTACTATTAG
AA sequence Show only first row Show all	>Lus10007219 pacid=23167583 polypeptide=Lus10007219 locus=Lus10007219.g ID=Lus10007219.BGIv1.0 annot-version=v1.0 MGYRCVDCGFPITTLYVQYSPGNIRLMKCENCKAVADEYIECEFMIIVIDLILHKPKAYRHLLFNVLNQKTAVVEVFMDVLVGNSLFLCVFLLAAKIMLN FSITFSRLRELLLVILVSSYFKIFLITMMTNLHPINYSVISNRVPTAANMVALEGSWTCYYY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01020		ARV1	Arv1-like protein (.1.2)		Lus10007219 [exp]	0	1
AT4G01995			unknown protein		Lus10016264 [exp]	1.0	0.8457
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Lus10033990 [exp]	4.6	0.8021
AT2G33735			Chaperone DnaJ-domain superfam...		Lus10040535 [exp]	4.9	0.7735
AT1G62680			Pentatricopeptide repeat (PPR)...		Lus10042220 [exp]	5.3	0.8139
AT2G14110			Haloacid dehalogenase-like hyd...		Lus10020444 [exp]	6.7	0.7480
AT3G59570			Ypt/Rab-GAP domain of gyp1p su...		Lus10022963 [exp]	6.9	0.7627
AT1G67120			ATPases;nucleotide binding;ATP...		Lus10037616 [exp]	7.5	0.7922
AT5G22460			alpha/beta-Hydrolases superfam...		Lus10020603 [exp]	8.1	0.7587
AT2G36110			Polynucleotidyl transferase, r...		Lus10029479 [exp]	13.0	0.7400
AT5G56130		THO3, AtTEX1	Transducin/WD40 repeat-like su...		Lus10027113 [exp]	14.7	0.7546

Compare expression of checked genes

Lus10007219 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.