Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37370 318 / 2e-105 CYP81D8 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) AT3G28740 315 / 6e-104 CYP81D11, CYP81D1 cytochrome P450, family 81, subfamily D, polypeptide 11, Cytochrome P450 superfamily protein (.1) AT4G37400 314 / 7e-104 CYP81F3 "cytochrome P450, family 81, subfamily F, polypeptide 3", cytochrome P450, family 81, subfamily F, polypeptide 3 (.1) AT4G37320 313 / 2e-103 CYP81D5 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) AT4G37340 312 / 5e-103 CYP81D3 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1) AT4G37360 306 / 1e-100 CYP81D2 "cytochrome P450, family 81, subfamily D, polypeptide 2", cytochrome P450, family 81, subfamily D, polypeptide 2 (.1) AT4G37330 305 / 3e-100 CYP81D4 "cytochrome P450, family 81, subfamily D, polypeptide 4", cytochrome P450, family 81, subfamily D, polypeptide 4 (.1) AT4G37410 305 / 4e-100 CYP81F4 "cytochrome P450, family 81, subfamily F, polypeptide 4", cytochrome P450, family 81, subfamily F, polypeptide 4 (.1) AT5G36220 301 / 1e-98 CYP91A1, CYP81D1 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) AT5G57220 300 / 3e-98 CYP81F2 "cytochrome P450, family 81, subfamily F, polypeptide 2", cytochrome P450, family 81, subfamily F, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011958 [exp] 364 / 3e-123 AT5G36220 548 / 0.0 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) Lus10027614 [exp] 347 / 3e-117 AT4G37370 496 / 6e-174 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10020437 [exp] 196 / 3e-58 AT4G37370 630 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10025923 [exp] 177 / 9e-51 AT4G31970 420 / 4e-142 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Lus10018717 [exp] 176 / 1e-50 AT4G37370 533 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10038200 [exp] 175 / 4e-50 AT4G31940 451 / 2e-154 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10024816 [exp] 175 / 5e-50 AT4G37370 506 / 2e-176 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10025902 [exp] 175 / 6e-50 AT4G31940 449 / 1e-153 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10008112 [exp] 171 / 2e-48 AT5G07990 407 / 2e-137 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G050000 [exp] 319 / 6e-106 AT4G37370 509 / 3e-178 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.005G143800 [exp] 298 / 2e-97 AT4G37370 539 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.003G006000 [exp] 296 / 1e-96 AT4G37370 526 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.008G205200 [exp] 295 / 2e-96 AT4G37370 524 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.003G007000 [exp] 290 / 2e-94 AT4G37370 525 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.003G008200 [exp] 285 / 2e-92 AT4G37370 531 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.003G007900 [exp] 280 / 2e-90 AT4G37370 524 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.005G143900 [exp] 270 / 8e-87 AT4G37370 511 / 5e-179 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.007G049900 [exp] 270 / 1e-86 AT4G37370 490 / 1e-170 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.005G144000 [exp] 268 / 5e-86 AT5G36220 496 / 6e-173 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10007220 pacid=23167596 polypeptide=Lus10007220 locus=Lus10007220.g ID=Lus10007220.BGIv1.0 annot-version=v1.0 ATGTGGCTGCAGTTGGGATCCCGTCCGGTGATCCTCGTATCCTCATTGGACGTGGCTGAAGAATGCTTCACTGGAAAAAACGATGTCCACCTCGTCAACC GTCCGGAGCTCATGGTCGGGAAACACATTGCCTATAACCACACAACCATGTCTGAAACATCTTATGGAGAGCATTGGCGCAACCTCCGCCGAATCGCTGC TGCCGAAATATTCTCACCCGGACGGCTCAACAAATTCGCCGACATCCGGAAGGACGAGCTAAAGTGGCTACTACTGCGGCTCAATAATAACACCAGTAAG AAAGTGGAGCTAAGGGAGATGTTTCAAGATTTAACATTCAACCTCATAATGAGGATGATTGCGGGGAAGAGATACTACGGGAATGTGTTGGCCAACAACG ACGATTCAGCTGAATTTAAAGAGGTGATGACAGAGGTTATGGGAGCTTCCAGTAGTGCAGTTTCTTTGCCTATCATGAATTGGATTGATGGTGGTAAATT TGAGAAGAAATTGGTTTTACTACTGGCGGGAACAGACACGGCAACAGTGACACTAGAATGGGCAATGTCAAACTTAATAAACCATCCACAAATCCTAAAC AAAGCAAGAGAAGAAATTGAGGCAGAGATAGAAGATCGTCGGCTACAAGAATCAGACATTCCAAAACTAGACTATCTACAGAGCATCATGTTGGAAACGC TGCGTTTATACCCATCAGCTCGGCTTCTGCTTCCCCACCGCTCGTCGCGAGATGTCACCCTTGCTGGATACCGCGTCCCGAGAAACAGGATAGTGCTGGT CAACGCATGGGCCATCCATAGAGATCCTCGGGTTTGGGAAGACCCTACGAGTTTCAACCCGGAGAGATTCCAGAATATTGTTCATGATCATAATAAGAAG GTAATCGGGTTGGCTCTGGGATCTTTGATACAGTGCTTTGATTGGGATAATAAAGATGGTCTCGTCATTGACAAGGCAGAAGGCAGTGGAGCGACCATGC CGACACTGATTCCACTGCAGGCCAATTGCAGTCCTCGACCCATTATCAGCAAGCTTGGTCTAGCTTGA
AA sequence Show only first row Show all	>Lus10007220 pacid=23167596 polypeptide=Lus10007220 locus=Lus10007220.g ID=Lus10007220.BGIv1.0 annot-version=v1.0 MWLQLGSRPVILVSSLDVAEECFTGKNDVHLVNRPELMVGKHIAYNHTTMSETSYGEHWRNLRRIAAAEIFSPGRLNKFADIRKDELKWLLLRLNNNTSK KVELREMFQDLTFNLIMRMIAGKRYYGNVLANNDDSAEFKEVMTEVMGASSSAVSLPIMNWIDGGKFEKKLVLLLAGTDTATVTLEWAMSNLINHPQILN KAREEIEAEIEDRRLQESDIPKLDYLQSIMLETLRLYPSARLLLPHRSSRDVTLAGYRVPRNRIVLVNAWAIHRDPRVWEDPTSFNPERFQNIVHDHNKK VIGLALGSLIQCFDWDNKDGLVIDKAEGSGATMPTLIPLQANCSPRPIISKLGLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10007220 [exp]	0	1
AT4G35220			Cyclase family protein (.1)		Lus10019823 [exp]	9.2	0.9999
AT4G35160			O-methyltransferase family pro...		Lus10017691 [exp]	9.7	0.9994
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10009736 [exp]	13.0	0.9999
AT4G17260			Lactate/malate dehydrogenase f...		Lus10028931 [exp]	16.0	0.9999
AT1G72460			Leucine-rich repeat protein ki...		Lus10015678 [exp]	16.1	0.9923
					Lus10016593 [exp]	18.4	0.9999
					Lus10016867 [exp]	20.6	0.9999
AT3G15990		SULTR3;4	sulfate transporter 3;4 (.1)		Lus10043247 [exp]	21.4	0.9965
					Lus10026149 [exp]	22.1	0.9950
AT3G11930			Adenine nucleotide alpha hydro...		Lus10029310 [exp]	22.4	0.9933

Compare expression of checked genes

Lus10007220 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.