Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030016 [exp] 190 / 1e-55 AT2G32970 799 / 0.0 unknown protein Lus10029998 [exp] 104 / 1e-25 AT1G05020 437 / 5e-139 ENTH/ANTH/VHS superfamily protein (.1) Lus10029986 [exp] 103 / 2e-25 AT1G20920 347 / 2e-109 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10039716 [exp] 75 / 7e-16 ND / Lus10018544 [exp] 71 / 9e-15 ND / Lus10018543 [exp] 72 / 2e-14 AT1G03510 534 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10037440 [exp] 65 / 4e-12 AT1G69630 84 / 5e-17 F-box/RNI-like superfamily protein (.1) Lus10033817 [exp] 63 / 2e-11 AT1G54710 866 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Lus10018960 [exp] 61 / 1e-10 AT1G54710 947 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007227 pacid=23182150 polypeptide=Lus10007227 locus=Lus10007227.g ID=Lus10007227.BGIv1.0 annot-version=v1.0 ATGACCATAGATCGATCCTTCTTAGCGGAGAAGAAGCTGACACTTTCGTGTCCACAACTTGAGGCATTCATTTTAGTGGCACCACCGGGATTGGAAGAGA TTGAGCTCGACGCTGGGCAGAATTTTCGAAAATTCTACTTGCATTTGAATAAGCTGGATAAACTGAAGAAATGTGAAATCCGCAATGCGGCTACTGATTG TAGATGGAAAGTCATGGTCTACAATCAAAATTATACACTCCAATGGTTTGTTAGTCTGAAGAGGTTCATTGCCAGATTTCCTCAATTCCACATGACCGTT AGCATCTCCGCTCTCCAGGACGCCTTGATTTTTGCTGGAGATCAAAGCGGCAACGAAGGCGCTAGCAAACCGAACGCCGGAAGAAGCAATTTTGATATGG GAGGAAATGAATTTCAGAGAGCTCGGATGCTTGGGCACTATATAAACAGAGACTTGGATCCTCCCATGGCCGAATTCGAGTGTGAGACCTCAGACGGGAC AGTGGAATATGATCAACAAGGTGAGAAATCCATCAGATTTCCTGATTTTCTTGTCGAAATGACTTACGAAATTCCTCTGCTTATGTTTAATACTGAGAAC GGTCAACGGCGGAAGAGTGGACCACTAGACATGCTTGAAGTTCTCTAA
AA sequence Show only first row Show all	>Lus10007227 pacid=23182150 polypeptide=Lus10007227 locus=Lus10007227.g ID=Lus10007227.BGIv1.0 annot-version=v1.0 MTIDRSFLAEKKLTLSCPQLEAFILVAPPGLEEIELDAGQNFRKFYLHLNKLDKLKKCEIRNAATDCRWKVMVYNQNYTLQWFVSLKRFIARFPQFHMTV SISALQDALIFAGDQSGNEGASKPNAGRSNFDMGGNEFQRARMLGHYINRDLDPPMAEFECETSDGTVEYDQQGEKSIRFPDFLVEMTYEIPLLMFNTEN GQRRKSGPLDMLEVL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10007227 [exp]	0	1
AT5G43820			Pentatricopeptide repeat (PPR)...		Lus10010662 [exp]	5.1	0.7580
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10013074 [exp]	10.7	0.7612
					Lus10025603 [exp]	20.8	0.7366
AT5G02770		MOS11	modifier of snc1, 11, unknown ...		Lus10019894 [exp]	38.6	0.7418
AT5G15270			RNA-binding KH domain-containi...		Lus10017596 [exp]	56.6	0.6954
AT3G61120	MADS	AGL13	AGAMOUS-like 13 (.1)		Lus10012545 [exp]	63.8	0.6778
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Lus10020727 [exp]	74.5	0.7065
AT1G65070			DNA mismatch repair protein Mu...		Lus10018187 [exp]	129.9	0.6885
AT5G36930			Disease resistance protein (TI...		Lus10001375 [exp]	160.7	0.6733
AT5G48120			ARM repeat superfamily protein...		Lus10037557 [exp]	233.5	0.6634

Compare expression of checked genes

Lus10007227 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.