Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49720 338 / 5e-118 unknown protein AT5G65810 330 / 5e-115 CGR3 cotton Golgi-related 3, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039648 [exp] 446 / 2e-160 AT3G49720 405 / 2e-144 unknown protein Lus10011564 [exp] 388 / 1e-137 AT3G49720 422 / 4e-151 unknown protein Lus10019279 [exp] 382 / 2e-135 AT3G49720 421 / 7e-151 unknown protein Lus10032796 [exp] 299 / 2e-102 AT3G49720 337 / 7e-118 unknown protein Lus10012481 [exp] 293 / 3e-100 AT3G49720 332 / 1e-115 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G082400 [exp] 332 / 2e-115 AT3G49720 393 / 7e-140 unknown protein Potri.001G288200 [exp] 320 / 8e-111 AT3G49720 342 / 1e-119 unknown protein Potri.002G114000 [exp] 320 / 9e-111 AT5G65810 364 / 2e-128 cotton Golgi-related 3, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007228 pacid=23182167 polypeptide=Lus10007228 locus=Lus10007228.g ID=Lus10007228.BGIv1.0 annot-version=v1.0 ATGTCGAGGAGGCAAGTCGGCTCCGCCAGGCGATTCATCGACTCCGGCAACTTCCCTCTCTCTTCTTCTGTCTATCCCAAGTCCCGCTCTTCTCCTCTCA TCTCCGTTGCTCTCGTCGTCCTGGGAGCTCTCCTTCTTATCGCCTATGCTTATGGCGGTCCAGGTTTGTTCAGAGGTAACGGAGTTAGTAAGATCGATGG TGATTATACCTGCACGGCAGAAGTCCAAAAAGCAATACCTTACCTGAAGAAAGCATATGGAGACAACATGCGTAAAGTCTTGCACGTTGGTCCTGATACT TGTGGTGTTGTCTCGACATTGTTGAAAGAAGAGGAAACTGAAGCTTGGGGTTTGGAACCGTATGACATAGAGGATGCAGATGCAAGCTGCAAAAATCTTG TCCGAAAGGGTCTTGTTCGTGTCGCTGATATCAAATTCCCTCTTGCCTACAAGCCAAAATCATTTTCACTTGTTATTGTGTCAGATGCTCTTGATTACCT TTCACCCAAGTACCTAAACAGGACACTTCCAGAATTAGCCAGAGTTGCTACGGATGGTGTCGTCATATTTACAGGGCACCCTGGCCAGCAGAGAGCTAAA GTAGCAGAGTTGTCCAAATTTGGACGGCCGCCGAAAATGAGGAGCTCTTCATGGTGGATTCGCTATTTTGTTCTAACGAGCTTACAAGAGAATGAAGTTG CTCAAAAGAAGTTTGATCAGGCAGCTTTTAAGAGGGCGTACAAGCCAAACTGTCAAGTTTTCCACCTCAACCCGTATCGCTAG
AA sequence Show only first row Show all	>Lus10007228 pacid=23182167 polypeptide=Lus10007228 locus=Lus10007228.g ID=Lus10007228.BGIv1.0 annot-version=v1.0 MSRRQVGSARRFIDSGNFPLSSSVYPKSRSSPLISVALVVLGALLLIAYAYGGPGLFRGNGVSKIDGDYTCTAEVQKAIPYLKKAYGDNMRKVLHVGPDT CGVVSTLLKEEETEAWGLEPYDIEDADASCKNLVRKGLVRVADIKFPLAYKPKSFSLVIVSDALDYLSPKYLNRTLPELARVATDGVVIFTGHPGQQRAK VAELSKFGRPPKMRSSSWWIRYFVLTSLQENEVAQKKFDQAAFKRAYKPNCQVFHLNPYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49720			unknown protein		Lus10007228 [exp]	0	1
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10004699 [exp]	1.7	0.9381
AT5G65650			Protein of unknown function (D...		Lus10014322 [exp]	2.0	0.9231
AT4G18760		AtRLP51	receptor like protein 51 (.1)		Lus10015226 [exp]	2.6	0.8978
AT4G35320			unknown protein		Lus10001621 [exp]	4.2	0.9030
AT5G08580			Calcium-binding EF hand family...		Lus10017370 [exp]	4.9	0.8960
AT3G12610		DRT100	DNA-DAMAGE REPAIR/TOLERATION 1...		Lus10015700 [exp]	6.0	0.8911
AT1G44224			ECA1 gametogenesis related fam...		Lus10039882 [exp]	6.5	0.8901
AT3G17120			unknown protein		Lus10037790 [exp]	6.6	0.8919
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10040265 [exp]	7.3	0.8941
AT3G23050	AUX_IAA	AXR2, IAA7	AUXIN RESISTANT 2, indole-3-ac...		Lus10002724 [exp]	8.7	0.8714

Compare expression of checked genes

Lus10007228 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.