Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27590 280 / 2e-95 unknown protein AT1G27570 205 / 6e-62 phosphatidylinositol 3- and 4-kinase family protein (.1.2) AT5G01400 125 / 9e-33 ESP4 ENHANCED SILENCING PHENOTYPE 4, HEAT repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028228 [exp] 440 / 3e-158 AT1G27590 271 / 4e-91 unknown protein Lus10005032 [exp] 130 / 2e-34 AT5G01400 1159 / 0.0 ENHANCED SILENCING PHENOTYPE 4, HEAT repeat-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G107400 [exp] 326 / 2e-103 AT1G27595 762 / 0.0 unknown protein Potri.016G116600 [exp] 142 / 2e-38 AT5G01400 1348 / 0.0 ENHANCED SILENCING PHENOTYPE 4, HEAT repeat-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11935 [flax] [poplar] DUF3453 Domain of unknown function (DUF3453)
Representative CDS sequence Show only first row Show all	>Lus10007229 pacid=23182170 polypeptide=Lus10007229 locus=Lus10007229.g ID=Lus10007229.BGIv1.0 annot-version=v1.0 ATGGCTTCACGAGACCAGGCGCTGTCTCTCCTCGGCGCGGCTAGGGCGCATGCCGATGTCGCCGTCAAGCTTTCTTCCCTTAGACAGGCCAGACACATTC TCTTGTCCATCCAGCCCTCATTGGCTGCCGAGCTCTTCCCTTACTTGGTCGACCTCCAGTATTCATCTGACAACCTCGTCAGGAAGATGCTTCTTGAGAT AATTGAAGAACTTGGTATGAAAGCTATGGAGCATTTTCACCTACTAGTGCCGGTTTTGCTGGTGCTTCTAAGAGATGCAGATCCCATAATTGCTAGGGAG TCTGTTGCCAGTGGCATACATTTTTTCTGTGCCGTTCTGGAGGAAATGGCATTTCAGTTTCACCAACGTGGTAAAGTAGAGCGCTGGCTTGAAGAGCTCT GGATATGGATGCTTAAATTTAAGGATTGTGTTTTCTCCATTTCGTTTGAGCCTGGTTCCATTGGACCGAAGTTGCTGGCATTGAAATTTCTGGAAACATA CATTTTACTTTTTACTCCAGACATGAATGATTCAGACAAAAGTGCCATGGGAGGAAGTAGACGATTATTTAATATCTCATGGCTGGGAGGTTACCATCCT GTGTTGGATCCTGTTTCTCTCATTTCTGATGCAAATAGGACATTAGGTATTCTATTGGATTTTCTAGGGTCACCTGGCAGCCTTCGTGGTTCTTTGGCAA TTGCTGTTGTCAATTGGTGA
AA sequence Show only first row Show all	>Lus10007229 pacid=23182170 polypeptide=Lus10007229 locus=Lus10007229.g ID=Lus10007229.BGIv1.0 annot-version=v1.0 MASRDQALSLLGAARAHADVAVKLSSLRQARHILLSIQPSLAAELFPYLVDLQYSSDNLVRKMLLEIIEELGMKAMEHFHLLVPVLLVLLRDADPIIARE SVASGIHFFCAVLEEMAFQFHQRGKVERWLEELWIWMLKFKDCVFSISFEPGSIGPKLLALKFLETYILLFTPDMNDSDKSAMGGSRRLFNISWLGGYHP VLDPVSLISDANRTLGILLDFLGSPGSLRGSLAIAVVNW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27590			unknown protein		Lus10007229 [exp]	0	1
AT1G27590			unknown protein		Lus10028228 [exp]	1.0	0.9510
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10015202 [exp]	4.5	0.9359
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10004303 [exp]	6.9	0.8987
AT4G27010		EMB2788	EMBRYO DEFECTIVE 2788, unknown...		Lus10041554 [exp]	7.9	0.9407
AT4G32700		TEB	TEBICHI, helicases;ATP-depende...		Lus10022115 [exp]	8.1	0.9317
AT1G64790		ILA	ILITYHIA (.1.2)		Lus10004767 [exp]	9.5	0.9379
AT2G13540		ENS, CBP80, ABH...	ENSALADA, CAP-BINDING PROTEIN ...		Lus10019032 [exp]	14.1	0.9341
AT4G38120			ARM repeat superfamily protein...		Lus10033266 [exp]	14.1	0.9265
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Lus10022482 [exp]	14.5	0.9302
AT5G47690			binding (.1.2.3)		Lus10039082 [exp]	15.0	0.9201

Compare expression of checked genes

Lus10007229 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.