Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27595 323 / 3e-98 unknown protein AT5G01400 223 / 2e-61 ESP4 ENHANCED SILENCING PHENOTYPE 4, HEAT repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028229 [exp] 707 / 0 AT1G27595 494 / 3e-161 unknown protein Lus10005032 [exp] 179 / 1e-46 AT5G01400 1159 / 0.0 ENHANCED SILENCING PHENOTYPE 4, HEAT repeat-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G107400 [exp] 403 / 1e-125 AT1G27595 762 / 0.0 unknown protein Potri.016G116600 [exp] 243 / 2e-68 AT5G01400 1348 / 0.0 ENHANCED SILENCING PHENOTYPE 4, HEAT repeat-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12295 [flax] [poplar] Symplekin_C Symplekin tight junction protein C terminal
Representative CDS sequence Show only first row Show all	>Lus10007230 pacid=23182154 polypeptide=Lus10007230 locus=Lus10007230.g ID=Lus10007230.BGIv1.0 annot-version=v1.0 ATGGATCAATCAAGGAAAAGAAATCTTCCCCTGGATACCGACGAGCCAGTTAATGGTCATGAGGTGTCTCTTAAACGAAGTCGTTTTGGTCCTAATGACC CTTCAACCATGACAACTCACACAAATCATTCTGAGAAGGGTTCAGTGTTTTGCAATGGTACTCCGTCTAATGCTTCTGCAGTAGATGGTGATTTGACTCC CGCAGAGCAGATGATTGCCATGATCGGTGCATTACTTGCGGAAGGAGAAAGAGGGGCTGAATCACTTGAAATTCTTATTTCAAATATTCATCCTGATTTA CTTGCTGACATTGTCATCACTAATATGAAGCATTTGCCTAAGACCCTGCTATCTTTGCCAAAGCTTGGTAAGTTGCCAACCTCTCACCAACTTAGTTCTG TGACCAGCACTGCACAGTTTATTGCACCACCCATTGCGAACCAGTCCGCTTCTCCAGCCCTTGTTTCTCAGGCTGCTGCATCTGGTGTACCTACCAATAT CTTGGCTCCGCCTGATGCATCAACTACCAATAGTTTTCCCGCAGATTCAAAACGAGATCTGAGAAGGGATCCTCGCCGCCTCGATCCACGTCGTACAATG CCACCTGTTGGTGTATCATTGACATCTGATGTAGATGATACTGGTGTTATGGAACCTGAATTTGACCGGTCTACTTTTAGTAAGCCTTTGTCATTCTCTG TGTCAGGACCTGTTGAGAATATACCGGCAGCTTTGTCTTCGAACAATAATGTCGAGGAAAATATAGAGTTGGCTTCCGAAATTGATCAAGTCAGTGTGAA AGATGAGGACTTTGGTACAGAAGAACTCGTTCCTACCTCAGAAGCTATTCCTTCTGCAGAGTGGTCACTTTCTCCTCTGGATGTAGTTGTCCAGGACCGT GATGCATCATATTTTGATGTGGCATATGATGCTGAAACATCTTTCCTAGAATCTGATCAACATTCTCCTGATGCATCAAAAGAATTTGTGGCTGAGGATA CTCTTTCAGATCTGCCCCAGCTTCCAGTGTTTGTTGAACTAAATGAAGTGCAGCAAAGAAATGAAAGAAAAGCGGCAGTTGAGCGGATTATTGAATCCTA TAAGATCCTTCCCGACACTGATTGCACTAGCCATACACGCATGGCTTTACTTGCTCGGTTAGTTGCTCAGTGTGCTGTTCATTCACAAGATGATGTTCGA GCAAAGGCTATTCGGCTGGTGGCAAACAAACTTTATCAGCTAAGCTACATCTCAGAAAATATTGAGCAATTTGCAACAAATATGCTGTTATCTGCTGTAG ATCAGCAGGCTTCAGATGTAGGGCTTTCTGTGTCAATATCCACTGAGCAAAGAGGAGGCCAGGTTGGGACCCAGGAAACCTCAGTTAGTGGTTCTCATGT TCAAAGCGTTTCAACCTTGTCTCTCCCAGAAGCTCAGCGTCTTATTTCTTTGTTCTTCGCTTTGTGTACTAAGAAACCTAGTCTCCTTCAACTTGTCTTT GATGTTTATGGCCGAGCACCAAAAACAGTAAAACAGGCTGTTCACCGTCATATGCCTATTCTTATTAGGACTCTAGGATCATCTTATTCTGACCTTCTAC ATATAATAGCTGATCCACCAGAAGGGTGTGAGAATCTTTTGATGCTGGTTCAATGCTTTTCAAATATGCTGATGGCCTATGTTTTTTGTAAGGTGGTCCA AATATTAACCCAGGACACAACACCTTCGACTGATTTGATAGCTACCGTCAAACATCTATATGAAACGAAGCTAAAGGACGCTACAATACTAATTCCGATA TTGTCATCCCTTTCGAAGAGCGAGGTGTTACCTATCTTCCCGCGACTTGTTGGGCTTCCGATAGAGAAGTTCCAGATGGCACTAGCTCATATTTTACAGG GTTCAGCGCATACAGGTCCAGCTTTGAGTCCTGCGGAGGTTCTGGTTGCCATCCATGGTATCAGTCCCGAGAAAGATGGCCTTGCATTGAAAAAGGCATG TTGGTGTTGTTAA
AA sequence Show only first row Show all	>Lus10007230 pacid=23182154 polypeptide=Lus10007230 locus=Lus10007230.g ID=Lus10007230.BGIv1.0 annot-version=v1.0 MDQSRKRNLPLDTDEPVNGHEVSLKRSRFGPNDPSTMTTHTNHSEKGSVFCNGTPSNASAVDGDLTPAEQMIAMIGALLAEGERGAESLEILISNIHPDL LADIVITNMKHLPKTLLSLPKLGKLPTSHQLSSVTSTAQFIAPPIANQSASPALVSQAAASGVPTNILAPPDASTTNSFPADSKRDLRRDPRRLDPRRTM PPVGVSLTSDVDDTGVMEPEFDRSTFSKPLSFSVSGPVENIPAALSSNNNVEENIELASEIDQVSVKDEDFGTEELVPTSEAIPSAEWSLSPLDVVVQDR DASYFDVAYDAETSFLESDQHSPDASKEFVAEDTLSDLPQLPVFVELNEVQQRNERKAAVERIIESYKILPDTDCTSHTRMALLARLVAQCAVHSQDDVR AKAIRLVANKLYQLSYISENIEQFATNMLLSAVDQQASDVGLSVSISTEQRGGQVGTQETSVSGSHVQSVSTLSLPEAQRLISLFFALCTKKPSLLQLVF DVYGRAPKTVKQAVHRHMPILIRTLGSSYSDLLHIIADPPEGCENLLMLVQCFSNMLMAYVFCKVVQILTQDTTPSTDLIATVKHLYETKLKDATILIPI LSSLSKSEVLPIFPRLVGLPIEKFQMALAHILQGSAHTGPALSPAEVLVAIHGISPEKDGLALKKACWCC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27595			unknown protein		Lus10007230 [exp]	0	1
AT1G27595			unknown protein		Lus10028229 [exp]	1.0	0.9720
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Lus10025853 [exp]	1.4	0.9559
AT1G64570		DUO3	DUO POLLEN 3, Homeodomain-like...		Lus10002076 [exp]	3.0	0.9292
AT1G31810		AFH14	Formin Homology 14 (.1)		Lus10023804 [exp]	4.9	0.9240
AT3G43610			Spc97 / Spc98 family of spindl...		Lus10008428 [exp]	5.3	0.9297
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Lus10004145 [exp]	5.5	0.9291
AT1G68990		MGP3	male gametophyte defective 3 (...		Lus10019207 [exp]	5.5	0.9297
AT5G40480		EMB3012	embryo defective 3012 (.1)		Lus10022271 [exp]	6.9	0.9501
AT4G24610			unknown protein		Lus10015962 [exp]	8.7	0.9161
AT3G19740			P-loop containing nucleoside t...		Lus10040976 [exp]	9.2	0.9137

Compare expression of checked genes

Lus10007230 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.